Alexander Goesmann

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 10

Top Topics

Automatic Indexing

Scientific Data Management

Comparative Genomics

Top Venues

Nucleic Acids Res.

Publications

Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann
Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. BMC Bioinform. 25 (1) (2024)
Michael Diepenbroek, Ivaylo Kostadinov, Bernhard Seeger, Frank Oliver Glöckner, Marius A. Dieckmann, Alexander Goesmann, Barbara Ebert, Sonja Schimmler, York Sure-Vetter
Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture. CoRDI (2023)
Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI (2023)
Marius A. Dieckmann, Sebastian Beyvers, Jannis Hochmuth, Anna Rehm, Frank Förster, Alexander Goesmann
The Aruna Object Storage A Distributed Multi Cloud Object Storage System for Scientific Data Management. CoRDI (2023)
Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider
Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. Bioinform. 38 (2) (2022)
Marius A. Dieckmann, Sebastian Beyvers, Rudel Christian Nkouamedjo-Fankep, Patrick Harald Georg Hanel, Lukas Jelonek, Jochen Blom, Alexander Goesmann
EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Oliver Schwengers, Torsten Hain, Trinad Chakraborty, Alexander Goesmann
ReferenceSeeker: rapid determination of appropriate reference genomes. J. Open Source Softw. 5 (46) (2020)
Oliver Schwengers, Andreas Hoek, Moritz Fritzenwanker, Linda Falgenhauer, Torsten Hain, Trinad Chakraborty, Alexander Goesmann
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PLoS Comput. Biol. 16 (3) (2020)
Jochen Blom, Julian Kreis, Sebastian Spänig, Tobias Juhre, Claire Bertelli, Corinna Ernst, Alexander Goesmann
EDGAR 2.0: an enhanced software platform for comparative gene content analyses. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Rolf Hilker, Kai Bernd Stadermann, Oliver Schwengers, Evgeny Anisiforov, Sebastian Jaenicke, Bernd Weisshaar, Tobias Zimmermann, Alexander Goesmann
ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. Bioinform. 32 (24) (2016)
Daniel Langenkämper, Alexander Goesmann, Tim W. Nattkemper
AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization. BMC Bioinform. 15 (2014)
Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer
) Open. Nat. 505 (7484) (2014)
Rolf Hilker, Kai Bernd Stadermann, Daniel Doppmeier, Jörn Kalinowski, Jens Stoye, Jasmin Straube, Jörn Winnebald, Alexander Goesmann
ReadXplorer - visualization and analysis of mapped sequences. Bioinform. 30 (16) (2014)
Nikolas Kessler, Heiko Neuweger, Anja Bonte, Georg Langenkämper, Karsten Niehaus, Tim W. Nattkemper, Alexander Goesmann
MeltDB 2.0-advances of the metabolomics software system. Bioinform. 29 (19) (2013)
Burkhard Linke, Robert Giegerich, Alexander Goesmann
Conveyor: a workflow engine for bioinformatic analyses. Bioinform. 27 (7) (2011)
Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jörn Kalinowski, Jens Stoye, Alexander Goesmann
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinform. 27 (10) (2011)
Naryttza N. Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim W. Nattkemper
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinform. 10 (2009)
Heiko Neuweger, Marcus Persicke, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Winnebald, Jessica Schneider, Jörn Kalinowski, Alexander Goesmann
Visualizing post genomics data-sets on customized pathway maps by ProMeTra - aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Syst. Biol. 3 (2009)
Jochen Blom, Stefan P. Albaum, Daniel Doppmeier, Alfred Pühler, Frank-Jörg Vorhölter, Martha Zakrzewski, Alexander Goesmann
EDGAR: A software framework for the comparative analysis of prokaryotic genomes. BMC Bioinform. 10 (2009)
Michael Dondrup, Stefan P. Albaum, Thasso Griebel, Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann
EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinform. 10 (2009)
Justina Krawczyk, Alexander Goesmann, Ralf Nolte, Martin Werber, Bernd Weisshaar
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code Biol. Medicine 4 (2009)
Stefan P. Albaum, Heiko Neuweger, Benjamin Fränzel, Sita Lange, Dominik Mertens, Christian Trötschel, Dirk Wolters, Jörn Kalinowski, Tim W. Nattkemper, Alexander Goesmann
Qupe - a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinform. 25 (23) (2009)
Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinform. 10 (2009)
Heiko Neuweger, Stefan P. Albaum, Michael Dondrup, Marcus Persicke, Tony Watt, Karsten Niehaus, Jens Stoye, Alexander Goesmann
MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinform. 24 (23) (2008)
Sebastian Oehm, David R. Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Heiko Neuweger, Jan Baumbach, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Kalinowski, Sebastian Oehm, Alfred Pühler, Sven Rahmann, Jochen Weile, Alexander Goesmann
CoryneCenter - An online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Syst. Biol. 1 (2007)
Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster
BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinform. 21 (7) (2005)
Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer
Development of joint application strategies for two microbial gene finders. Bioinform. 20 (10) (2004)
Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinform. 18 (1) (2002)