Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Jochen BlomTobias JakobiDaniel DoppmeierSebastian JaenickeJörn KalinowskiJens StoyeAlexander GoesmannPublished in: Bioinform. (2011)
Keyphrases
- graphics processing units
- sequence data
- general purpose
- gpu implementation
- graphics hardware
- phylogenetic analysis
- sequence analysis
- parallel computing
- parallel processing
- massively parallel
- floating point
- sequence alignment
- parallel computation
- real time
- computing systems
- parallel programming
- efficient implementation
- programming environment
- highly parallel
- parallel implementation
- high performance computing
- graphics processors
- high throughput
- fine grained
- compute unified device architecture
- integral histogram
- regulatory elements