Stefan Wuchty

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 11

Top Topics

Particle Swarm Optimization

Transfer Learning

Gene Expression

Protein Interaction

Top Venues

Briefings Bioinform.

Publications

Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM. Briefings Bioinform. 25 (2) (2024)
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network. Briefings Bioinform. 24 (2) (2023)
Minsu Park, Suman Kalyan Maity, Stefan Wuchty, Dashun Wang
Interdisciplinary Papers Supported by Disciplinary Grants Garner Deep and Broad Scientific Impact. CoRR (2023)
Xiaodi Yang, Shiping Yang, Xianyi Lian, Stefan Wuchty, Ziding Zhang
Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction. Bioinform. 37 (24) (2021)
Xiaodi Yang, Xianyi Lian, Chen Fu, Stefan Wuchty, Shiping Yang, Ziding Zhang
HVIDB: a comprehensive database for human-virus protein-protein interactions. Briefings Bioinform. 22 (2) (2021)
Xiaodi Yang, Ziding Zhang, Stefan Wuchty
Multi-scale Convolutional Neural Networks for the Prediction of Human-virus Protein Interactions. ICAART (2) (2021)
Hassen Dhrif, Stefan Wuchty
Stable Feature Selection for Gene Expression using Enhanced Binary Particle Swarm Optimization. ICAART (2) (2020)
Hassen Dhrif, Verónica Bolón-Canedo, Stefan Wuchty
Gene Subset Selection for Transfer Learning using Bilevel Particle Swarm Optimization. ICMLA (2020)
Hassen Dhrif, Luis G. Sánchez Giraldo, Miroslav Kubat, Stefan Wuchty
A stable hybrid method for feature subset selection using particle swarm optimization with local search. GECCO (2019)
Hassen Dhrif, Luis G. Sánchez Giraldo, Miroslav Kubat, Stefan Wuchty
A Stable Combinatorial Particle Swarm Optimization for Scalable Feature Selection in Gene Expression Data. CoRR (2019)
J. Harry Caufield, Christopher Wimble, Shary Semarjit, Stefan Wuchty, Peter Uetz
Bacterial protein meta-interactomes predict cross-species interactions and protein function. BMC Bioinform. 18 (1) (2017)
Mohamed Sordo, Mitsunori Ogihara, Stefan Wuchty
Analysis of the Evolution of Research Groups and Topics in the ISMIR Conference. ISMIR (2015)
Sarah L. Keasey, Mohan Natesan, Christine Pugh, Teddy Kamata, Stefan Wuchty, Robert G. Ulrich
The road to linking genomics and proteomics of pathogenic bacteria: from binary protein complexes to interaction pathways. BMC Bioinform. 16 (S-2) (2015)
Sawsan Khuri, Stefan Wuchty
Essentiality and centrality in protein interaction networks revisited. BMC Bioinform. 16 (2015)
Stefan Wuchty, Dolores Arjona, Peter O. Bauer
Important miRs of Pathways in Different Tumor Types. PLoS Comput. Biol. 9 (1) (2013)
Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka
Module Cover - A New Approach to Genotype-Phenotype Studies. Pacific Symposium on Biocomputing (2013)
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
Identifying Causal Genes and Dysregulated Pathways in Complex Diseases. PLoS Comput. Biol. 7 (3) (2011)
Stefan Wuchty, Alice Zhang, Jennifer Walling, Susie Ahn, Aiguo Li, Martha Quezado, Carl Oberholtzer, Jean-Claude Zenklusen, Howard A. Fine
Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology. J. Biomed. Informatics 43 (6) (2010)
Serdar Bozdag, Aiguo Li, Stefan Wuchty, Howard A. Fine
FastMEDUSA: a parallelized tool to infer gene regulatory networks. Bioinform. 26 (14) (2010)
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. RECOMB (2010)
Yang Huang, Stefan Wuchty, Michael T. Ferdig, Teresa M. Przytycka
. Bioinform. 25 (12) (2009)
Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre
Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges, Ursula Kummer
combAlign: A protein sequence comparison algorithm considering recombinations. Silico Biol. 4 (3) (2004)