Jesús A. Izaguirre

Publication Activity (10 Years)

Years Active: 2001-2014
Publications (10 Years): 0

Top Topics

Subcellular Localization

Higher Throughput

Queuing Systems

Protein Folding

Top Venues

J. Chem. Inf. Model.

Publications

Badi Abdul-Wahid, Haoyun Feng, Dinesh Rajan, Ronan Costaouec, Eric Darve, Douglas Thain, Jesús A. Izaguirre
AWE-WQ: Fast-Forwarding Molecular Dynamics Using the Accelerated Weighted Ensemble. J. Chem. Inf. Model. 54 (10) (2014)
Dinesh Rajan, Andrew Thrasher, Badi Abdul-Wahid, Jesús A. Izaguirre, Scott J. Emrich, Douglas Thain
Case Studies in Designing Elastic Applications. CCGRID (2013)
Badi Abdul-Wahid, Li Yu, Dinesh Rajan, Haoyun Feng, Eric Darve, Douglas Thain, Jesús A. Izaguirre
Folding proteins at 500 ns/hour with Work Queue. eScience (2012)
Dinesh Rajan, Anthony Canino, Jesús A. Izaguirre, Douglas Thain
Converting a High Performance Application to an Elastic Cloud Application. CloudCom (2011)
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre
Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus Xanthus. Pacific Symposium on Biocomputing (2010)
Trevor M. Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesús A. Izaguirre
MDLab: A molecular dynamics simulation prototyping environment. J. Comput. Chem. 31 (7) (2010)
Jesús A. Izaguirre, Christopher R. Sweet, Vijay S. Pande
Multiscale Dynamics of Macromolecules Using Normal Mode Langevin. Pacific Symposium on Biocomputing (2010)
Faruck Morcos, Santanu Chatterjee, Christopher L. McClendon, Paul R. Brenner, Roberto López-Rendón, John Zintsmaster, Mária Ercsey-Ravasz, Christopher R. Sweet, Matthew P. Jacobson, Jeffrey W. Peng, Jesús A. Izaguirre
Modeling Conformational Ensembles of Slow Functional Motions in Pin1-WW. PLoS Comput. Biol. 6 (12) (2010)
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre
Belief propagation estimation of protein and domain interactions using the sum-product algorithm. IEEE Trans. Inf. Theory 56 (2) (2010)
Faruck Morcos, Charles Lamanna, Nitesh V. Chawla, Jesús A. Izaguirre
Determination of Specificity Residues in Two Component Systems using Graphlets. BIOCOMP (2009)
Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús A. Izaguirre
plug-in for protein and domain interaction networks inference. Bioinform. 24 (19) (2008)
Justin M. Wozniak, Paul R. Brenner, Douglas Thain, Aaron Striegel, Jesús A. Izaguirre
Making the best of a bad situation: Prioritized storage management in GEMS. Future Gener. Comput. Syst. 24 (1) (2008)
Paul R. Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, Jeffrey W. Peng, Jesús A. Izaguirre
Biomolecular committor probability calculation enabled by processing in network storage. Parallel Comput. 34 (11) (2008)
Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús A. Izaguirre
plug-in for protein and domain interaction networks inference. Bioinform. 24 (23) (2008)
Trevor M. Cickovski, Kedar Aras, Maciej Swat, Roeland Merks, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre
From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. Comput. Sci. Eng. 9 (4) (2007)
Nan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. Comput. Phys. Commun. 176 (11-12) (2007)
Paul R. Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, Jeffrey W. Peng, Jesús A. Izaguirre
Biomolecular Path Sampling Enabled by Processing in Network Storage. IPDPS (2007)
Trevor M. Cickovski, Chris Sweet, Jesús A. Izaguirre
MDL, A Domain-Specific Language for Molecular Dynamics. Annual Simulation Symposium (2007)
Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre
Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Douglas Thain, Sander Klous, Justin M. Wozniak, Paul R. Brenner, Aaron Striegel, Jesús A. Izaguirre
Separating Abstractions from Resources in a Tactical Storage System. SC (2005)
Justin M. Wozniak, Paul R. Brenner, Douglas Thain, Aaron Striegel, Jesús A. Izaguirre
Generosity and gluttony in GEMS: grid enabled molecular simulations. HPDC (2005)
Justin M. Wozniak, Aaron Striegel, David Salyers, Jesús A. Izaguirre
GIPSE: Streamlining the Management of Simulation on the Grid. Annual Simulation Symposium (2005)
Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre
A Framework for Three-Dimensional Simulation of Morphogenesis. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (4) (2005)
Jesús A. Izaguirre, Scott S. Hampton, Thierry Matthey
-body problem. J. Parallel Distributed Comput. 65 (8) (2005)
Michael S. Crocker, Scott S. Hampton, Thierry Matthey, Jesús A. Izaguirre
MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms. J. Comput. Chem. 26 (10) (2005)
Rajiv Chaturvedi, Chengbang Huang, Jesús A. Izaguirre, Stuart A. Newman, James A. Glazier, Mark S. Alber
A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb. ACRI (2004)
Jesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor M. Cickovski, J. Coffland, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, H. George E. Hentschel, Stuart A. Newman, James A. Glazier
COMPUCELL, a multi-model framework for simulation of morphogenesis. Bioinform. 20 (7) (2004)
Thierry Matthey, Trevor M. Cickovski, Scott S. Hampton, Alice Ko, Qun Ma, Matthew Nyerges, Troy Raeder, Thomas Slabach, Jesús A. Izaguirre
ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics. ACM Trans. Math. Softw. 30 (3) (2004)
Scott S. Hampton, Jesús A. Izaguirre
Improved Sampling for Biological Molecules Using Shadow Hybrid Monte Carlo. International Conference on Computational Science (2004)
Qun Ma, Jesús A. Izaguirre
Long Time Step Molecular Dynamics using Targeted Langevin Stabilization. SAC (2003)
Qun Ma, Jesús A. Izaguirre, Robert D. Skeel
Nonlinear Instability in Multiple Time Stepping Molecular Dynamics. SAC (2003)
Qun Ma, Jesús A. Izaguirre, Robert D. Skeel
Verlet-I/R-RESPA/Impulse is Limited by Nonlinear Instabilities. SIAM J. Sci. Comput. 24 (6) (2003)
Rajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor M. Cickovski, P. Virtue, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, H. George E. Hentschel, Stuart A. Newman, James A. Glazier
Multi-model Simulations of Chicken Limb Morphogenesis. International Conference on Computational Science (2003)
Thierry Matthey, Alice Ko, Jesús A. Izaguirre
PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development. International Conference on Computational Science (2003)
Qun Ma, Jesús A. Izaguirre
Targeted Mollified Impulse: A Multiscale Stochastic Integrator for Long Molecular Dynamics Simulations. Multiscale Model. Simul. 2 (1) (2003)
Thierry Matthey, Jesús A. Izaguirre
ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization. PPSC (2001)
Shannon K. Kuntz, Richard C. Murphy, Michael T. Niemier, Jesús A. Izaguirre, Peter M. Kogge
Petaflop Computing for Protein Folding. PPSC (2001)