Ziding Zhang

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 13

Top Topics

Computational Approaches

Convolutional Network

Protein Interaction

Current Status And Future

Top Venues

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM. Briefings Bioinform. 25 (2) (2024)
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network. Briefings Bioinform. 24 (2) (2023)
Xiaodi Yang, Shiping Yang, Xianyi Lian, Stefan Wuchty, Ziding Zhang
Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction. Bioinform. 37 (24) (2021)
Xianyi Lian, Xiaodi Yang, Shiping Yang, Ziding Zhang
Current status and future perspectives of computational studies on human-virus protein-protein interactions. Briefings Bioinform. 22 (5) (2021)
Xiaodi Yang, Xianyi Lian, Chen Fu, Stefan Wuchty, Shiping Yang, Ziding Zhang
HVIDB: a comprehensive database for human-virus protein-protein interactions. Briefings Bioinform. 22 (2) (2021)
Xiaodi Yang, Ziding Zhang, Stefan Wuchty
Multi-scale Convolutional Neural Networks for the Prediction of Human-virus Protein Interactions. ICAART (2) (2021)
Xianyi Lian, Xiaodi Yang, Jiqi Shao, Fujun Hou, Shiping Yang, Dongli Pan, Ziding Zhang
Prediction and analysis of human-herpes simplex virus type 1 protein-protein interactions by integrating multiple methods. Quant. Biol. 8 (4) (2020)
Shiping Yang, Hong Li, Huaqin He, Yuan Zhou, Ziding Zhang
Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods. Briefings Bioinform. 20 (1) (2019)
Shiwei Ma, Qi Song, Huan Tao, Andrew P. Harrison, Shaobo Wang, Wei Liu, Shoukai Lin, Ziding Zhang, Yufang Ai, Huaqin He
Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.). Briefings Bioinform. 20 (2) (2019)
Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. Genom. Proteom. Bioinform. 16 (4) (2018)
Xiaobao Dong, Xiaotian Lu, Ziding Zhang
BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors. Database J. Biol. Databases Curation 2015 (2015)
Zhen Chen, Yuan Zhou, Ziding Zhang, Jiangning Song
Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 16 (4) (2015)
Yuan Zhou, Shiping Yang, Tonglin Mao, Ziding Zhang
MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins. Database J. Biol. Databases Curation 2015 (2015)
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
Outer membrane proteins can be simply identified using secondary structure element alignment. BMC Bioinform. 12 (2011)
Chuan Wang, Ren-Xiang Yan, Xiao-Feng Wang, Jing-Na Si, Ziding Zhang
Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments. Comput. Biol. Chem. 35 (5) (2011)
Ren-Xiang Yan, Jing-Na Si, Chuan Wang, Ziding Zhang
DescFold: A web server for protein fold recognition. BMC Bioinform. 10 (2009)
Yong-Zi Chen, Yu-Rong Tang, Zhi-Ya Sheng, Ziding Zhang
-spaced amino acid pairs. BMC Bioinform. 9 (2008)
Laurence Miguet, Ziding Zhang, Maryse Barbier, Martin G. Grigorov
Comparison of a homology model and the crystallographic structure of human 11β-hydroxysteroid dehydrogenase type 1 (11βHSD1) in a structure-based identification of inhibitors. J. Comput. Aided Mol. Des. 20 (2) (2006)