Zhen Chen

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 10

Top Topics

Feature Engineering

Computational Framework

Top Venues

Briefings Bioinform.

Genom. Proteom. Bioinform.

Nucleic Acids Res.

Publications

Varun S. Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G. Williams, Zhen Chen, Wenguang Shao, Patrick G. A. Pedrioli, Anthony W. Purcell, María Rodríguez Martínez, Jiangning Song, Matteo Manica, Ruedi Aebersold, Chen Li
PCfun: a hybrid computational framework for systematic characterization of protein complex function. Briefings Bioinform. 23 (4) (2022)
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B. Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz A. Kurgan, Jiangning Song
an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets. Nucleic Acids Res. 50 (W1) (2022)
Zhen Chen, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. Briefings Bioinform. 21 (5) (2020)
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. Briefings Bioinform. 21 (3) (2020)
Yiming Zhao, Ningning He, Zhen Chen, Lei Li
Identification of Protein Lysine Crotonylation Sites by a Deep Learning Framework With Convolutional Neural Networks. IEEE Access 8 (2020)
Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Abdelkader Baggag, Halima Bensmail, Jiangning Song
PROSPECT: A web server for predicting protein histidine phosphorylation sites. J. Bioinform. Comput. Biol. 18 (4) (2020)
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li, Kuo-Chen Chou, Jiangning Song
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Briefings Bioinform. 20 (6) (2019)
Zhen Chen, Ningning He, Yu Huang, Wen Tao Qin, Xuhan Liu, Lei Li
Integration of A Deep Learning Classifier with A Random Forest Approach for Predicting Malonylation Sites. Genom. Proteom. Bioinform. 16 (6) (2018)
Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Yanan Wang, Geoffrey I. Webb, Alexander Ian Smith, Roger J. Daly, Kuo-Chen Chou, Jiangning Song
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences. Bioinform. 34 (14) (2018)
Zhen Chen, Yuan Zhou, Ziding Zhang, Jiangning Song
Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 16 (4) (2015)
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
Outer membrane proteins can be simply identified using secondary structure element alignment. BMC Bioinform. 12 (2011)