Chen Li

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 25

Top Topics

Parallel Data Mining

Structural Features

Protein Interaction

Top Venues

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Liangwei Zhao, Ran Hao, Ziyi Chai, Weiwei Fu, Wei Yang, Chen Li, Quanzhong Liu, Yu Jiang
DeepOCR: A multi-species deep-learning framework for accurate identification of open chromatin regions in livestock. Comput. Biol. Chem. 110 (2024)
Jing Xu, Jiarui Ou, Chen Li, Zheng Zhu, Jian Li, Hailun Zhang, Junchen Chen, Bin Yi, Wu Zhu, Weiru Zhang, Guanxiong Zhang, Qian Gao, Yehong Kuang, Jiangning Song, Xiang Chen, Hong Liu
Multi-modality data-driven analysis of diagnosis and treatment of psoriatic arthritis. npj Digit. Medicine 6 (2023)
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. Bioinform. 39 (3) (2023)
Fang Ge, Chen Li, Shahid Iqbal, Muhammad Arif, Fuyi Li, Maha A. Thafar, Zihao Yan, Apilak Worachartcheewan, Xiaofeng Xu, Jiangning Song, Dong-Jun Yu
VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants. Briefings Bioinform. 24 (1) (2023)
Ruyi Chen, Fuyi Li, Xudong Guo, Yue Bi, Chen Li, Shirui Pan, Lachlan J. M. Coin, Jiangning Song
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species. Briefings Bioinform. 24 (3) (2023)
Jiani Ma, Chen Li, Yiwen Zhang, Zhikang Wang, Shanshan Li, Yuming Guo, Lin Zhang, Hui Liu, Xin Gao, Jiangning Song
MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning. Bioinform. 39 (9) (2023)
Lianghui Ding, Hongyu Gao, Huan Lin, Chen Li, Yangyang Liu, Feng Yang
Link-Breakage Recovery Strategies for Tactical MANET Based on OLSR. IFTC (1) (2023)
Jing Xu, Fuyi Li, Chen Li, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Seiya Imoto, Jianhua Yao, Tatsuya Akutsu, Jiangning Song
iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities. Briefings Bioinform. 24 (4) (2023)
Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. 23 (2) (2022)
Varun S. Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G. Williams, Zhen Chen, Wenguang Shao, Patrick G. A. Pedrioli, Anthony W. Purcell, María Rodríguez Martínez, Jiangning Song, Matteo Manica, Ruedi Aebersold, Chen Li
PCfun: a hybrid computational framework for systematic characterization of protein complex function. Briefings Bioinform. 23 (4) (2022)
Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23 (1) (2022)
Chen Li, Xiaoguang Yu, Shuangyong Song, Jia Wang, Bo Zou, Xiaodong He
SimCTC: A Simple Contrast Learning Method of Text Clustering (Student Abstract). AAAI (2022)
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B. Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz A. Kurgan, Jiangning Song
an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets. Nucleic Acids Res. 50 (W1) (2022)
Chen Li, Li Song, Xueyi Zou, Jiaming Guo, Youliang Yan, Wenjun Zhang
Multi-Scale Coarse-to-Fine Transformer for Frame Interpolation. ACM Multimedia (2022)
Fuyi Li, Yang Zhang, Anthony W. Purcell, Geoffrey I. Webb, Kuo-Chen Chou, Trevor Lithgow, Chen Li, Jiangning Song
Positive-unlabelled learning of glycosylation sites in the human proteome. BMC Bioinform. 20 (1) (2019)
Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform. 20 (6) (2019)
Xiaochuan Wang, Chen Li, Fuyi Li, Varun S. Sharma, Jiangning Song, Geoffrey I. Webb
SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models. BMC Bioinform. 20 (1) (2019)
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li, Kuo-Chen Chou, Jiangning Song
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Briefings Bioinform. 20 (6) (2019)
Yi An, Jiawei Wang, Chen Li, André Leier, Tatiana T. Marquez-Lago, Jonathan Wilksch, Yang Zhang, Geoffrey I. Webb, Jiangning Song, Trevor Lithgow
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI. Briefings Bioinform. 19 (1) (2018)
Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Anthony W. Purcell, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, Jiangning Song, Kuo-Chen Chou
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Bioinform. 34 (24) (2018)
Bangli Lu, Chen Li, Qingfeng Chen, Jiangning Song
ProBAPred: Inferring protein-protein binding affinity by incorporating protein sequence and structural features. J. Bioinform. Comput. Biol. 16 (4) (2018)
Chen Li, Jeremy Nagel, Steve G. Androulakis, Christopher J. Lupton, Jiangning Song, Ashley M. Buckle
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. Database J. Biol. Databases Curation 2016 (2016)
Chen Li, Jeremy Nagel, Steve G. Androulakis, Jiangning Song, Ashley M. Buckle
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. Database J. Biol. Databases Curation 2016 (2016)
Chen Li, Steve G. Androulakis, Ashley M. Buckle, Jiangning Song
KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins. Database J. Biol. Databases Curation 2016 (2016)
Chen Li, Catherine Ching Han Chang, Jeremy Nagel, Benjamin T. Porebski, Morihiro Hayashida, Tatsuya Akutsu, Jiangning Song, Ashley M. Buckle
methods for prediction of coiled-coil domains in proteins. Briefings Bioinform. 17 (2) (2016)
Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song
GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome. Bioinform. 31 (9) (2015)
Chen Li, Xue-Liang Hua
Towards Positive Unlabeled Learning for Parallel Data Mining: A Random Forest Framework. ADMA (2014)
Xiangju Qin, Yang Zhang, Chen Li, Xue Li
Learning from data streams with only positive and unlabeled data. J. Intell. Inf. Syst. 40 (3) (2013)
Chen Li, Yang Zhang, Xue Li
OcVFDT: one-class very fast decision tree for one-class classification of data streams. KDD Workshop on Knowledge Discovery from Sensor Data (2009)
Chen Li, Yang Zhang
Bagging One-Class Decision Trees. FSKD (2) (2008)