Geoffrey I. Webb

ORCID

Publication Activity (10 Years)

Years Active: 1988-2024
Publications (10 Years): 162

Top Venues

CoRR

Data Min. Knowl. Discov.

Briefings Bioinform.

Bioinform.

Publications

Navid Mohammadi Foumani, Lynn Miller, Chang Wei Tan, Geoffrey I. Webb, Germain Forestier, Mahsa Salehi
Deep Learning for Time Series Classification and Extrinsic Regression: A Current Survey. ACM Comput. Surv. 56 (9) (2024)
Huan Yee Koh, Anh T. N. Nguyen, Shirui Pan, Lauren T. May, Geoffrey I. Webb
Physicochemical graph neural network for learning protein-ligand interaction fingerprints from sequence data. Nat. Mac. Intell. 6 (6) (2024)
Anthony J. Bagnall, Matthew Middlehurst, Germain Forestier, Ali Ismail-Fawaz, Antoine Guillaume, David Guijo-Rubio, Chang Wei Tan, Angus Dempster, Geoffrey I. Webb
A Hands-on Introduction to Time Series Classification and Regression. KDD (2024)
Lynn Miller, Charlotte Pelletier, Geoffrey I. Webb
Deep Learning for Satellite Image Time Series Analysis: A Review. CoRR (2024)
Navid Mohammadi Foumani, Chang Wei Tan, Geoffrey I. Webb, Mahsa Salehi
Improving position encoding of transformers for multivariate time series classification. Data Min. Knowl. Discov. 38 (1) (2024)
Angus Dempster, Geoffrey I. Webb, Daniel F. Schmidt
Prevalidated ridge regression is a highly-efficient drop-in replacement for logistic regression for high-dimensional data. CoRR (2024)
Shiyuan Li, Yixin Liu, Qingfeng Chen, Geoffrey I. Webb, Shirui Pan
Noise-Resilient Unsupervised Graph Representation Learning via Multi-Hop Feature Quality Estimation. CoRR (2024)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
quant: a minimalist interval method for time series classification. Data Min. Knowl. Discov. 38 (4) (2024)
Navid Mohammadi Foumani, Chang Wei Tan, Geoffrey I. Webb, Hamid Rezatofighi, Mahsa Salehi
Series2vec: similarity-based self-supervised representation learning for time series classification. Data Min. Knowl. Discov. 38 (4) (2024)
Zahra Zamanzadeh Darban, Geoffrey I. Webb, Mahsa Salehi
DACAD: Domain Adaptation Contrastive Learning for Anomaly Detection in Multivariate Time Series. CoRR (2024)
Mengmeng Gao, Daokun Zhang, Yi Chen, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Geoffrey I. Webb, Anh T. N. Nguyen, Lauren T. May, Jiangning Song
GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction. Comput. Biol. Medicine 173 (2024)
Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb
Elastic similarity and distance measures for multivariate time series. Knowl. Inf. Syst. 65 (6) (2023)
Loong Kuan Lee, Geoffrey I. Webb, Daniel F. Schmidt, Nico Piatkowski
Computing Marginal and Conditional Divergences between Decomposable Models with Applications. ICDM (2023)
Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters. Briefings Bioinform. 24 (4) (2023)
Zahra Zamanzadeh Darban, Geoffrey I. Webb, Shirui Pan, Mahsa Salehi
CARLA: A Self-supervised Contrastive Representation Learning Approach for Time Series Anomaly Detection. CoRR (2023)
Matthieu Herrmann, Chang Wei Tan, Geoffrey I. Webb
Parameterizing the cost function of dynamic time warping with application to time series classification. Data Min. Knowl. Discov. 37 (5) (2023)
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. Bioinform. 39 (3) (2023)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
QUANT: A Minimalist Interval Method for Time Series Classification. CoRR (2023)
Huan Zhang, Liangxiao Jiang, Geoffrey I. Webb
Rigorous non-disjoint discretization for naive Bayes. Pattern Recognit. 140 (2023)
Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean
A Bayesian-inspired, deep learning-based, semi-supervised domain adaptation technique for land cover mapping. Mach. Learn. 112 (6) (2023)
Matthieu Herrmann, Geoffrey I. Webb
Amercing: An intuitive and effective constraint for dynamic time warping. Pattern Recognit. 137 (2023)
Seyed Navid Mohammadi Foumani, Chang Wei Tan, Geoffrey I. Webb, Mahsa Salehi
Improving Position Encoding of Transformers for Multivariate Time Series Classification. CoRR (2023)
Ming Jin, Huan Yee Koh, Qingsong Wen, Daniele Zambon, Cesare Alippi, Geoffrey I. Webb, Irwin King, Shirui Pan
A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detection. CoRR (2023)
Matthieu Herrmann, Chang Wei Tan, Geoffrey I. Webb
Parameterizing the cost function of Dynamic Time Warping with application to time series classification. CoRR (2023)
Ali Ismail-Fawaz, Hassan Ismail Fawaz, François Petitjean, Maxime Devanne, Jonathan Weber, Stefano Berretti, Geoffrey I. Webb, Germain Forestier
ShapeDBA: Generating Effective Time Series Prototypes using ShapeDTW Barycenter Averaging. CoRR (2023)
Yizhen Zheng, Huan Yee Koh, Jiaxin Ju, Anh T. N. Nguyen, Lauren T. May, Geoffrey I. Webb, Shirui Pan
Large Language Models for Scientific Synthesis, Inference and Explanation. CoRR (2023)
Chang Wei Tan, Matthieu Herrmann, Geoffrey I. Webb
Ultra-fast meta-parameter optimization for time series similarity measures with application to nearest neighbour classification. Knowl. Inf. Syst. 65 (5) (2023)
Ali Ismail-Fawaz, Angus Dempster, Chang Wei Tan, Matthieu Herrmann, Lynn Miller, Daniel F. Schmidt, Stefano Berretti, Jonathan Weber, Maxime Devanne, Germain Forestier, Geoffrey I. Webb
An Approach to Multiple Comparison Benchmark Evaluations that is Stable Under Manipulation of the Comparate Set. CoRR (2023)
Ali Ismail-Fawaz, Hassan Ismail Fawaz, François Petitjean, Maxime Devanne, Jonathan Weber, Stefano Berretti, Geoffrey I. Webb, Germain Forestier
ShapeDBA: Generating Effective Time Series Prototypes Using ShapeDTW Barycenter Averaging. AALTD@ECML/PKDD (2023)
Navid Mohammadi Foumani, Chang Wei Tan, Geoffrey I. Webb, Mahsa Salehi
Series2Vec: Similarity-based Self-supervised Representation Learning for Time Series Classification. CoRR (2023)
Viet Huynh, Buser Say, Peter Vogel, Lucy Cao, Geoffrey I. Webb, Aldeida Aleti
Rapid Identification of Protein Formulations with Bayesian Optimisation. ICMLA (2023)
Seyed Navid Mohammadi Foumani, Lynn Miller, Chang Wei Tan, Geoffrey I. Webb, Germain Forestier, Mahsa Salehi
Deep Learning for Time Series Classification and Extrinsic Regression: A Current Survey. CoRR (2023)
Rakshitha Godahewa, Geoffrey I. Webb, Daniel F. Schmidt, Christoph Bergmeir
SETAR-Tree: a novel and accurate tree algorithm for global time series forecasting. Mach. Learn. 112 (7) (2023)
Loong Kuan Lee, Nico Piatkowski, François Petitjean, Geoffrey I. Webb
Computing Divergences between Discrete Decomposable Models. AAAI (2023)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
Hydra: competing convolutional kernels for fast and accurate time series classification. Data Min. Knowl. Discov. 37 (5) (2023)
Yashpal Ramakrishnaiah, Nenad Macesic, Geoffrey I. Webb, Anton Y. Peleg, Sonika Tyagi
EHR-QC: A streamlined pipeline for automated electronic health records standardisation and preprocessing to predict clinical outcomes. J. Biomed. Informatics 147 (2023)
Loong Kuan Lee, Geoffrey I. Webb, Daniel F. Schmidt, Nico Piatkowski
Computing Marginal and Conditional Divergences between Decomposable Models with Applications. CoRR (2023)
Matthieu Herrmann, Chang Wei Tan, Mahsa Salehi, Geoffrey I. Webb
Proximity Forest 2.0: A new effective and scalable similarity-based classifier for time series. CoRR (2023)
Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. 23 (2) (2022)
Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23 (1) (2022)
Khanh Nguyen, Trung Le, Tu Dinh Nguyen, Geoffrey I. Webb, Dinh Phung
Robust Variational Learning for Multiclass Kernel Models With Stein Refinement. IEEE Trans. Knowl. Data Eng. 34 (9) (2022)
Yanan Wang, Changyuan Hu, Terry Kwok, Christopher A. Bain, Xiangyang Xue, Robin B. Gasser, Geoffrey I. Webb, Alex Boussioutas, Xian Shen, Roger J. Daly, Jiangning Song
DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images. Bioinform. 38 (17) (2022)
Shahid Iqbal, Fang Ge, Fuyi Li, Tatsuya Akutsu, Yuanting Zheng, Robin B. Gasser, Dong-Jun Yu, Geoffrey I. Webb, Jiangning Song
PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations. J. Chem. Inf. Model. 62 (17) (2022)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
HYDRA: Competing convolutional kernels for fast and accurate time series classification. CoRR (2022)
Rakshitha Godahewa, Geoffrey I. Webb, Daniel F. Schmidt, Christoph Bergmeir
SETAR-Tree: A Novel and Accurate Tree Algorithm for Global Time Series Forecasting. CoRR (2022)
Zahra Zamanzadeh Darban, Geoffrey I. Webb, Shirui Pan, Charu C. Aggarwal, Mahsa Salehi
Deep Learning for Time Series Anomaly Detection: A Survey. CoRR (2022)
Lynn Miller, Liujun Zhu, Marta Yebra, Christoph Rüdiger, Geoffrey I. Webb
Multi-modal temporal CNNs for live fuel moisture content estimation. Environ. Model. Softw. 156 (2022)
Chaitanya Manapragada, Heitor Murilo Gomes, Mahsa Salehi, Albert Bifet, Geoffrey I. Webb
An eager splitting strategy for online decision trees in ensembles. Data Min. Knowl. Discov. 36 (2) (2022)
Chang Wei Tan, Angus Dempster, Christoph Bergmeir, Geoffrey I. Webb
MultiRocket: multiple pooling operators and transformations for fast and effective time series classification. Data Min. Knowl. Discov. 36 (5) (2022)
Chaitanya Manapragada, Mahsa Salehi, Geoffrey I. Webb
Extremely Fast Hoeffding Adaptive Tree. ICDM (2022)
Xiaoyu Wang, Fuyi Li, Jing Xu, Jia Rong, Geoffrey I. Webb, Zongyuan Ge, Jian Li, Jiangning Song
ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning. Briefings Bioinform. 23 (2) (2022)
Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao, Cangzhi Jia, Jiangning Song
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations. Briefings Bioinform. 23 (6) (2022)
Gautier Pialla, Hassan Ismail Fawaz, Maxime Devanne, Jonathan Weber, Lhassane Idoumghar, Pierre-Alain Muller, Christoph Bergmeir, Daniel F. Schmidt, Geoffrey I. Webb, Germain Forestier
Smooth Perturbations for Time Series Adversarial Attacks. PAKDD (1) (2022)
Chang Wei Tan, Angus Dempster, Christoph Bergmeir, Geoffrey I. Webb
MultiRocket: Effective summary statistics for convolutional outputs in time series classification. CoRR (2021)
Yanan Wang, Litao Yang, Geoffrey I. Webb, Zongyuan Ge, Jiangning Song
OCTID: a one-class learning-based Python package for tumor image detection. Bioinform. 37 (21) (2021)
Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Rob J. Hyndman, Pablo Montero-Manso
Monash Time Series Forecasting Archive. CoRR (2021)
Matthieu Herrmann, Geoffrey I. Webb
Amercing: An Intuitive, Elegant and Effective Constraint for Dynamic Time Warping. CoRR (2021)
Rakshitha Godahewa, Kasun Bandara, Geoffrey I. Webb, Slawek Smyl, Christoph Bergmeir
Ensembles of localised models for time series forecasting. Knowl. Based Syst. 233 (2021)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
MiniRocket: A Very Fast (Almost) Deterministic Transform for Time Series Classification. KDD (2021)
Yanan Wang, Nicolas Coudray, Yun Zhao, Fuyi Li, Changyuan Hu, Yao-Zhong Zhang, Seiya Imoto, Aristotelis Tsirigos, Geoffrey I. Webb, Roger J. Daly, Jiangning Song
HEAL: an automated deep learning framework for cancer histopathology image analysis. Bioinform. 37 (22) (2021)
Geoffrey I. Webb, François Petitjean
Tight lower bounds for dynamic time warping. Pattern Recognit. 115 (2021)
Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb
Time series extrinsic regression. Data Min. Knowl. Discov. 35 (3) (2021)
Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Rob J. Hyndman, Pablo Montero-Manso
Monash Time Series Forecasting Archive. NeurIPS Datasets and Benchmarks (2021)
Shutao Mei, Fuyi Li, Dongxu Xiang, Rochelle Ayala, Pouya Faridi, Geoffrey I. Webb, Patricia T. Illing, Jamie Rossjohn, Tatsuya Akutsu, Nathan P. Croft, Anthony W. Purcell, Jiangning Song
Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules. Briefings Bioinform. 22 (5) (2021)
Loong Kuan Lee, Nico Piatkowski, François Petitjean, Geoffrey I. Webb
Estimating Divergences in High Dimensions. CoRR (2021)
Matthieu Herrmann, Geoffrey I. Webb
Early Abandoning and Pruning for Elastic Distances. CoRR (2021)
Matthieu Herrmann, Geoffrey I. Webb
Early abandoning and pruning for elastic distances including dynamic time warping. Data Min. Knowl. Discov. 35 (6) (2021)
Mario Boley, Simon Teshuva, Pierre Le Bodic, Geoffrey I. Webb
Better Short than Greedy: Interpretable Models through Optimal Rule Boosting. SDM (2021)
Chang Wei Tan, Matthieu Herrmann, Geoffrey I. Webb
Ultra fast warping window optimization for Dynamic Time Warping. ICDM (2021)
Mario Boley, Simon Teshuva, Pierre Le Bodic, Geoffrey I. Webb
Better Short than Greedy: Interpretable Models through Optimal Rule Boosting. CoRR (2021)
Menglu Li, Yanan Wang, Fuyi Li, Yun Zhao, Mengya Liu, Sijia Zhang, Yannan Bin, Alexander Ian Smith, Geoffrey I. Webb, Jian Li, Jiangning Song, Junfeng Xia
A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Geoffrey I. Webb, François Petitjean
Tight lower bounds for Dynamic Time Warping. CoRR (2021)
Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb
Elastic Similarity Measures for Multivariate Time Series Classification. CoRR (2021)
Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean
A Bayesian-inspired, deep learning, semi-supervised domain adaptation technique for land cover mapping. CoRR (2020)
Yuan Jin, Wray L. Buntine, François Petitjean, Geoffrey I. Webb
Discriminative, Generative and Self-Supervised Approaches for Target-Agnostic Learning. CoRR (2020)
Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb
Time Series Regression. CoRR (2020)
Fuyi Li, Cunshuo Fan, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Cangzhi Jia, Yan Zhu, Alexander Ian Smith, Geoffrey I. Webb, Quanzhong Liu, Leyi Wei, Jian Li, Jiangning Song
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact. Briefings Bioinform. 21 (3) (2020)
Chang Wei Tan, François Petitjean, Geoffrey I. Webb
FastEE: Fast Ensembles of Elastic Distances for time series classification. Data Min. Knowl. Discov. 34 (1) (2020)
Hassan Ismail Fawaz, Benjamin Lucas, Germain Forestier, Charlotte Pelletier, Daniel F. Schmidt, Jonathan Weber, Geoffrey I. Webb, Lhassane Idoumghar, Pierre-Alain Muller, François Petitjean
InceptionTime: Finding AlexNet for time series classification. Data Min. Knowl. Discov. 34 (6) (2020)
Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li, Jiangning Song
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. Genom. Proteom. Bioinform. 18 (1) (2020)
Geoffrey I. Webb
Time Series Classification at Scale. LWDA (2020)
Angus Dempster, François Petitjean, Geoffrey I. Webb
ROCKET: exceptionally fast and accurate time series classification using random convolutional kernels. Data Min. Knowl. Discov. 34 (5) (2020)
Zhen Chen, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. Briefings Bioinform. 21 (5) (2020)
Rakshitha Godahewa, Kasun Bandara, Geoffrey I. Webb, Slawek Smyl, Christoph Bergmeir
Ensembles of Localised Models for Time Series Forecasting. CoRR (2020)
Matthieu Herrmann, Geoffrey I. Webb
Early Abandoning PrunedDTW and its application to similarity search. CoRR (2020)
Chaitanya Manapragada, Heitor Murilo Gomes, Mahsa Salehi, Albert Bifet, Geoffrey I. Webb
An Eager Splitting Strategy for Online Decision Trees. CoRR (2020)
Georg Krempl, Vera Hofer, Geoffrey I. Webb, Eyke Hüllermeier
Beyond Adaptation: Understanding Distributional Changes (Dagstuhl Seminar 20372). Dagstuhl Reports 10 (4) (2020)
Benjamin Lucas, Charlotte Pelletier, Daniel F. Schmidt, Geoffrey I. Webb, François Petitjean
Unsupervised Domain Adaptation Techniques for Classification of Satellite Image Time Series. IGARSS (2020)
Raphael Fischer, Nico Piatkowski, Charlotte Pelletier, Geoffrey I. Webb, François Petitjean, Katharina Morik
No Cloud on the Horizon: Probabilistic Gap Filling in Satellite Image Series. DSAA (2020)
Chaitanya Manapragada, Geoffrey I. Webb, Mahsa Salehi, Albert Bifet
Emergent and Unspecified Behaviors in Streaming Decision Trees. CoRR (2020)
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. Bioinform. 36 (4) (2020)
Shenglei Chen, Geoffrey I. Webb, Linyuan Liu, Xin Ma
A novel selective naïve Bayes algorithm. Knowl. Based Syst. 192 (2020)
Nayyar Abbas Zaidi, Yang Du, Geoffrey I. Webb
On the Effectiveness of Discretizing Quantitative Attributes in Linear Classifiers. IEEE Access 8 (2020)
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. Briefings Bioinform. 21 (3) (2020)
Rakshitha Godahewa, Christoph Bergmeir, Geoffrey I. Webb, Pablo Montero-Manso
A Strong Baseline for Weekly Time Series Forecasting. CoRR (2020)
Ahmed Shifaz, Charlotte Pelletier, François Petitjean, Geoffrey I. Webb
TS-CHIEF: a scalable and accurate forest algorithm for time series classification. Data Min. Knowl. Discov. 34 (3) (2020)
Angus Dempster, Daniel F. Schmidt, Geoffrey I. Webb
MINIROCKET: A Very Fast (Almost) Deterministic Transform for Time Series Classification. CoRR (2020)
Mahardhika Pratama, Witold Pedrycz, Geoffrey I. Webb
An Incremental Construction of Deep Neuro Fuzzy System for Continual Learning of Nonstationary Data Streams. IEEE Trans. Fuzzy Syst. 28 (7) (2020)
Chang Wei Tan, Christoph Bergmeir, François Petitjean, Geoffrey I. Webb
Monash University, UEA, UCR Time Series Regression Archive. CoRR (2020)
Igor Goldenberg, Geoffrey I. Webb
PCA-based drift and shift quantification framework for multidimensional data. Knowl. Inf. Syst. 62 (7) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Geoffrey I. Webb