Qingfeng Chen

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 44

Top Topics

Computational Methods

Human Gait Recognition

Top Venues

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Wei Lan, Guohang He, Mingyang Liu, Qingfeng Chen, Junyue Cao, Wei Peng
Transformer-based Single-Cell Language Model: A Survey. CoRR (2024)
Wei Lan, Shengzu Huang, Xun Sun, Haibo Liao, Qingfeng Chen, Junyue Cao
Single-Cell Multi-omics Clustering Algorithm Based on Adaptive Weighted Hyper-laplacian Regularization. ISBRA (2) (2024)
Zhanyu Xu, Haibo Liao, Liuliu Huang, Qingfeng Chen, Wei Lan, Shikang Li
IBPGNET: lung adenocarcinoma recurrence prediction based on neural network interpretability. Briefings Bioinform. 25 (3) (2024)
Shiyuan Li, Yixin Liu, Qingfeng Chen, Geoffrey I. Webb, Shirui Pan
Noise-Resilient Unsupervised Graph Representation Learning via Multi-Hop Feature Quality Estimation. CoRR (2024)
Yixin Liu, Shiyuan Li, Yu Zheng, Qingfeng Chen, Chengqi Zhang, Shirui Pan
ARC: A Generalist Graph Anomaly Detector with In-Context Learning. CoRR (2024)
Wei Lan, Tianchuan Yang, Qingfeng Chen, Shichao Zhang, Yi Dong, Huiyu Zhou, Yi Pan
Multiview Subspace Clustering via Low-Rank Symmetric Affinity Graph. IEEE Trans. Neural Networks Learn. Syst. 35 (8) (2024)
Zhixian Liu, Qingfeng Chen, Wei Lan, Huihui Lu, Shichao Zhang
SSLDTI: A novel method for drug-target interaction prediction based on self-supervised learning. Artif. Intell. Medicine 149 (2024)
Shiyuan Li, Qingfeng Chen, Zhixian Liu, Shirui Pan, Shichao Zhang
Bi-SGTAR: A simple yet efficient model for circRNA-disease association prediction based on known association pair only. Knowl. Based Syst. 291 (2024)
Wei Lan, Weihao Zhou, Qingfeng Chen, Ruiqing Zheng, Yi Pan, Yi-Ping Phoebe Chen
Modeling Single-Cell ATAC-Seq Data Based on Contrastive Learning. ISBRA (1) (2024)
Liyu Huang, Qingfeng Chen, Wei Lan
Predicting drug-drug interactions based on multi-view and multichannel attention deep learning. Health Inf. Sci. Syst. 11 (1) (2023)
Wei Lan, Yi Dong, Hongyu Zhang, Chunling Li, Qingfeng Chen, Jin Liu, Jianxin Wang, Yi-Ping Phoebe Chen
Benchmarking of computational methods for predicting circRNA-disease associations. Briefings Bioinform. 24 (1) (2023)
Yixin Liu, Shirui Pan, Yu Guang Wang, Fei Xiong, Liang Wang, Qingfeng Chen, Vincent Cheng-Siong Lee
Anomaly Detection in Dynamic Graphs via Transformer. IEEE Trans. Knowl. Data Eng. 35 (12) (2023)
Junyue Cao, Diyar Qader Zeebaree, Qingfeng Chen, Dilovan Asaad Zebari
Breast cancer diagnosis using hybrid AlexNet-ELM and chimp optimization algorithm evolved by Nelder-mead simplex approach. Biomed. Signal Process. Control. 85 (2023)
Qingfeng Chen, Jing Wu, Feihu Huang, Yu Han, Qiming Zhao
Multi-layer LSTM Parallel Optimization Based on Hardware and Software Cooperation. KSEM (2) (2022)
Xiaojing Du, Qingfeng Chen, Debo Cheng, Qian Huang, Junyue Cao, Zhenyun Deng, Shichao Zhang
Stable Causal Feature Selection based on Direct Causal Effect Estimation. HPCC/DSS/SmartCity/DependSys (2022)
Hongtao Tang, Senli Ren, Weiguang Jiang, Qingfeng Chen
Optimization of Multi-Objective Unequal Area Facility Layout. IEEE Access 10 (2022)
Wei Lan, Ximin Wu, Qingfeng Chen, Wei Peng, Jianxin Wang, Yi-Ping Phoebe Chen
GANLDA: Graph attention network for lncRNA-disease associations prediction. Neurocomputing 469 (2022)
Wei Lan, Dehuan Lai, Qingfeng Chen, Ximin Wu, Baoshan Chen, Jin Liu, Jianxin Wang, Yi-Ping Phoebe Chen
LDICDL: LncRNA-Disease Association Identification Based on Collaborative Deep Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Wei Lan, Yi Dong, Qingfeng Chen, Jin Liu, Jianxin Wang, Yi-Ping Phoebe Chen, Shirui Pan
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Wei Lan, Jin Ye, Xun Sun, Xiaoshu Zhu, Qingfeng Chen, Yi Pan
scIAC: clustering scATAC-seq data based on Student's t-distribution similarity imputation and denoising autoencoder. BIBM (2022)
Qingfeng Chen, Jing Wu, Jing Liu, Yu Han
Neural Networks Implemented by Differential Evolutionary Algorithms to Counter Attacks. CSCloud/EdgeCom (2022)
Wei Lan, Yi Dong, Qingfeng Chen, Ruiqing Zheng, Jin Liu, Yi Pan, Yi-Ping Phoebe Chen
KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network. Briefings Bioinform. 23 (1) (2022)
Wei Lan, Mingrui Zhu, Qingfeng Chen, Jianwei Chen, Jin Ye, Jin Liu, Wei Peng, Shirui Pan
Prediction of circRNA-miRNA Associations Based on Network Embedding. Complex. 2021 (2021)
Hongtao Tang, Senli Ren, Weiguang Jiang, Jiajiong Liang, Qingfeng Chen
Joint Optimization of Multiprocess Routes and Layout for Low Entropy Flexible Facility. Comput. Intell. Neurosci. 2021 (2021)
Qingfeng Chen, Dehuan Lai, Wei Lan, Ximin Wu, Baoshan Chen, Jin Liu, Yi-Ping Phoebe Chen, Jianxin Wang
ILDMSF: Inferring Associations Between Long Non-Coding RNA and Disease Based on Multi-Similarity Fusion. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (3) (2021)
Luyao Qin, Xiao Ding, Yongjie Li, Qingfeng Chen, Jing Meng, Taijiao Jiang
Co-mutation modules capture the evolution and transmission patterns of SARS-CoV-2. Briefings Bioinform. 22 (6) (2021)
Liyu Huang, Qingfeng Chen, Yongjie Li, Cheng Luo
Classifying Conserved RNA Secondary Structures With Pseudoknots by Vector-Edit Distance. IEEE Access 9 (2021)
Qingfeng Chen, Yulu Qiao, Fang Hu, Yongjie Li, Kai Tan, Mingrui Zhu, Chengqi Zhang
Community detection in complex network based on APT method. Pattern Recognit. Lett. 138 (2020)
Ximin Wu, Wei Lan, Qingfeng Chen, Yi Dong, Jin Liu, Wei Peng
Inferring LncRNA-disease associations based on graph autoencoder matrix completion. Comput. Biol. Chem. 87 (2020)
Qingfeng Chen, Zhao Zhe, Wei Lan, Ruchang Zhang, Zhiqiang Wang, Cheng Luo, Yi-Ping Phoebe Chen
Erratum to: Identifying miRNA-disease association based on integrating miRNA topological similarity and functional similarity. Quant. Biol. 8 (3) (2020)
Wei Lan, Mingrui Zhu, Qingfeng Chen, Baoshan Chen, Jin Liu, Min Li, Yi-Ping Phoebe Chen
CircR2Cancer: a manually curated database of associations between circRNAs and cancers. Database J. Biol. Databases Curation 2020 (2020)
Qingfeng Chen, Zhao Zhe, Wei Lan, Ruchang Zhang, Zhiqiang Wang, Cheng Luo, Yi-Ping Phoebe Chen
Identifying MiRNA-disease association based on integrating miRNA topological similarity and functional similarity. Quant. Biol. 7 (3) (2019)
Qingfeng Chen, Canshang Deng, Wei Lan, Zhixian Liu, Ruiqing Zheng, Jin Liu, Jianxin Wang
Identifying Interactions Between Kinases and Substrates Based on Protein-Protein Interaction Network. J. Comput. Biol. 26 (8) (2019)
Qingfeng Chen, Xu Zhang, Ruchang Zhang
Privacy-preserving decision tree for epistasis detection. Cybersecur. 2 (1) (2019)
Bangli Lu, Chen Li, Qingfeng Chen, Jiangning Song
ProBAPred: Inferring protein-protein binding affinity by incorporating protein sequence and structural features. J. Bioinform. Comput. Biol. 16 (4) (2018)
Canshang Deng, Qingfeng Chen, Zhixian Liu, Ruiqing Zheng, Jin Liu, Jianxin Wang, Wei Lan
KSIBW: Predicting Kinase-Substrate Interactions Based on Bi-random Walk. ISBRA (2018)
Qingfeng Chen, Yiqi Wang, Baoshan Chen, Chengqi Zhang, Lusheng Wang, Jinyan Li
Using propensity scores to predict the kinases of unannotated phosphopeptides. Knowl. Based Syst. 135 (2017)
Liang Zhao, Qingfeng Chen, Wencui Li, Peng Jiang, Limsoon Wong, Jinyan Li
MapReduce for accurate error correction of next-generation sequencing data. Bioinform. 33 (23) (2017)
Qingfeng Chen, Chaowang Lan, Baoshan Chen, Lusheng Wang, Jinyan Li, Chengqi Zhang
Exploring Consensus RNA Substructural Patterns Using Subgraph Mining. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Lin Bai, Qingfeng Chen
Visual phrase recognition by modeling 3D spatial context of multiple objects. Neurocomputing 253 (2017)
Muqing Deng, Cong Wang, Qingfeng Chen
Human gait recognition based on deterministic learning through multiple views fusion. Pattern Recognit. Lett. 78 (2016)
Qingfeng Chen, Chaowang Lan, Jinyan Li, Baoshan Chen, Lusheng Wang, Chengqi Zhang
Depth-First Search Encoding of RNA Substructures. ICIC (1) (2016)
Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang
Interval-Based Similarity for Classifying Conserved RNA Secondary Structures. IEEE Intell. Syst. 31 (3) (2016)
Chaowang Lan, Qingfeng Chen, Jinyan Li
Grouping miRNAs of similar functions via weighted information content of gene ontology. BMC Bioinform. 17 (S-19) (2016)
Xin Yu, Lixia Tang, Qingfeng Chen, Chenhua Xu
Monotonicity and convergence of asynchronous update gradient method for ridge polynomial neural network. Neurocomputing 129 (2014)
Taoshen Li, Weina Wang, Qingfeng Chen
Research on the Projection Position-Based Sequential Pattern Mining Algorithm. Control. Intell. Syst. 42 (1) (2014)
Qingfeng Chen, Wei Lan, Jianxin Wang
Mining Featured Patterns of MiRNA Interaction Based on Sequence and Structure Similarity. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Qingfeng Chen, Yi-Ping Phoebe Chen
Discovering Inhibition Pathways for Protein Kinases. IEEE Intell. Syst. 27 (5) (2012)
Xin Yu, Qingfeng Chen
Convergence of gradient method with penalty for Ridge Polynomial neural network. Neurocomputing 97 (2012)
Qingfeng Chen, Yi-Ping Phoebe Chen
Modeling Conserved Structure Patterns for Functional Noncoding RNA. IEEE Trans. Biomed. Eng. 58 (6) (2011)
Qingfeng Chen, Yi-Ping Phoebe Chen
Function Annotation for Pseudoknot Using Structure Similarity. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Wei Lan, Qingfeng Chen, Taoshen Li
Discovery of MicroRNA conservative sites in drosophila melanogaster. BMEI (2011)
Qingfeng Chen, Shichao Zhang, Zhi Zhong
Dealing with inconsistent secure messages by weighting majority. Knowl. Based Syst. 24 (6) (2011)
Qingfeng Chen, Yi-Ping Phoebe Chen
Mining characteristic relations bind to RNA secondary structures. IEEE Trans. Inf. Technol. Biomed. 14 (1) (2010)
Shichao Zhang, Qingfeng Chen, Qiang Yang
Acquiring knowledge from inconsistent data sources through weighting. Data Knowl. Eng. 69 (8) (2010)
Qingfeng Chen, Yi-Ping Phoebe Chen
Discovery of Structural and Functional Features in RNA Pseudoknots. IEEE Trans. Knowl. Data Eng. 21 (7) (2009)
Qingfeng Chen, Shichao Zhang, Yi-Ping Phoebe Chen
Rule-based dependency models for security protocol analysis. Integr. Comput. Aided Eng. 15 (4) (2008)
Qingfeng Chen, Shichao Zhang, Yi-Ping Phoebe Chen
Identifying Dependency Between Secure Messages for Protocol Analysis. KSEM (2007)
Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang
Detecting inconsistency in biological molecular databases using ontologies. Data Min. Knowl. Discov. 15 (2) (2007)
Yi-Ping Phoebe Chen, Qiumei Qin, Qingfeng Chen
Learning Dependency Model for AMP-Activated Protein Kinase Regulation. KSEM (2007)
Yi-Ping Phoebe Chen, Qingfeng Chen
Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases. APBC (2006)
Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang, Lianggang Li
Mining Frequent Itemsets for Protein Kinase Regulation. PRICAI (2006)
Qingfeng Chen, Yi-Ping Phoebe Chen
Mining frequent patterns for AMP-activated protein kinase regulation on skeletal muscle. BMC Bioinform. 7 (2006)
Qingfeng Chen, Yi-Ping Phoebe Chen, Shichao Zhang, Chengqi Zhang
Detecting Collusion Attacks in Security Protocols. APWeb (2006)
Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang, Shichao Zhang
A Framework for Merging Inconsistent Beliefs in Security Protocol Analysis. DEEC (2005)
Qingfeng Chen, Yi-Ping Phoebe Chen
Analyzing Security Protocols Using Association Rule Mining. Australian Conference on Artificial Intelligence (2005)
Qingfeng Chen, Chengqi Zhang, Shichao Zhang
ENDL: A Logical Framework for Verifying Secure Transaction Protocols. Knowl. Inf. Syst. 7 (1) (2005)
Qingfeng Chen, Shichao Zhang
Dealing with Inconsistent Secure Messages. PRICAI (2004)
Qingfeng Chen, Chengqi Zhang, Shichao Zhang
A Verification Model for Electronic Transaction Protocols. APWeb (2004)
Qingfeng Chen, Chengqi Zhang, Shichao Zhang
Verifying the Payment Authorization in SET Protocol. IDEAL (2003)
Qingfeng Chen, Chengqi Zhang, Shichao Zhang, Chunsheng Li
Verifying the Purchase Request in SET Protocol. APWeb (2003)
Kaile Su, Xudong Luo, Huaiqing Wang, Chengqi Zhang, Shichao Zhang, Qingfeng Chen
A Logical Framework for Knowledge Sharing in Multi-agent Systems. COCOON (2001)