Jinyan Li

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 56

Top Venues

BMC Bioinform.

Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

IJCNN

Publications

Tian Lan, Shuquan Su, Pengyao Ping, Gyorgy Hutvagner, Tao Liu, Yi Pan, Jinyan Li
Generating mutants of monotone affinity towards stronger protein complexes through adversarial learning. Nat. Mac. Intell. 6 (3) (2024)
Xiaocai Zhang, Zhixun Zhao, Jinyan Li
ARDE-N-BEATS: An Evolutionary Deep Learning Framework for Urban Traffic Flow Prediction. IEEE Internet Things J. 10 (3) (2023)
Hui Peng, Yi Zheng, Zhixun Zhao, Jinyan Li
Multigene editing: current approaches and beyond. Briefings Bioinform. 22 (5) (2021)
Tao Tang, Jinyan Li
Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases. J. Bioinform. Comput. Biol. 19 (1) (2021)
Runbin Tang, Zuguo Yu, Yuanlin Ma, Yaoqun Wu, Yi-Ping Phoebe Chen, Limsoon Wong, Jinyan Li
Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning. Bioinform. 37 (6) (2021)
Xiaocai Zhang, Yi Zheng, Zhixun Zhao, Yuansheng Liu, Michael Blumenstein, Jinyan Li
Deep learning detection of anomalous patterns from bus trajectories for traffic insight analysis. Knowl. Based Syst. 217 (2021)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li, Michael Narag
Substituting clinical features using synthetic medical phrases: Medical text data augmentation techniques. Artif. Intell. Medicine 120 (2021)
Yuansheng Liu, Chaowang Lan, Michael Blumenstein, Jinyan Li
Bi-Level Error Correction for PacBio Long Reads. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li
A Dictionary-based Oversampling Approach to Clinical Document Classification on Small and Imbalanced Dataset. WI/IAT (2020)
Xiaocai Zhang, Zhixun Zhao, Yi Zheng, Jinyan Li
Prediction of Taxi Destinations Using a Novel Data Embedding Method and Ensemble Learning. IEEE Trans. Intell. Transp. Syst. 21 (1) (2020)
Yuansheng Liu, Limsoon Wong, Jinyan Li
Allowing mutations in maximal matches boosts genome compression performance. Bioinform. 36 (18) (2020)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li
Ontology-Guided Data Augmentation for Medical Document Classification. AIME (2020)
Jie Zheng, Jinyan Li, Yun Zheng
Guest Editorial for the 29th International Conference on Genome Informatics (GIW 2018). IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Yuansheng Liu, Zu-Guo Yu, Marcel E. Dinger, Jinyan Li
Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. Bioinform. 35 (12) (2019)
Yi Zheng, Hui Peng, Shameek Ghosh, Chaowang Lan, Jinyan Li
Inverse similarity and reliable negative samples for drug side-effect prediction. BMC Bioinform. (13) (2019)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li
Stratifying Risk of Coronary Artery Disease Using Discriminative Knowledge-Guided Medical Concept Pairings from Clinical Notes. PRICAI (3) (2019)
Buzhong Zhang, Jinyan Li, Lijun Quan, Yu Chen, Qiang Lü
Sequence-based prediction of protein-protein interaction sites by simplified long short-term memory network. Neurocomputing 357 (2019)
Xiaocai Zhang, Xuan Zhang, Sunny Verma, Yuansheng Liu, Michael Blumenstein, Jinyan Li
Detection of Anomalous Traffic Patterns and Insight Analysis from Bus Trajectory Data. PRICAI (3) (2019)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li
An Ontology-based Two-Stage Approach to Medical Text Classification with Feature Selection by Particle Swarm Optimisation. CEC (2019)
Yuansheng Liu, Leo Yu Zhang, Jinyan Li
Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers. Bioinform. 35 (22) (2019)
Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Xiaoying Gao, Jinyan Li
Old drug repositioning and new drug discovery through similarity learning from drug-target joint feature spaces. BMC Bioinform. (23) (2019)
Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Xiaoying Gao, Jinyan Li
DDI-PULearn: a positive-unlabeled learning method for large-scale prediction of drug-drug interactions. BMC Bioinform. (19) (2019)
Yi Zheng, Hui Peng, Xiaocai Zhang, Xiaoying Gao, Jinyan Li
Predicting Drug Targets from Heterogeneous Spaces using Anchor Graph Hashing and Ensemble Learning. IJCNN (2018)
Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li
Uncovering Discriminative Knowledge-Guided Medical Concepts for Classifying Coronary Artery Disease Notes. Australasian Conference on Artificial Intelligence (2018)
Yuanlin Ma, Zu-Guo Yu, Guo-Sheng Han, Jinyan Li, Vo Anh
Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs. BMC Bioinform. (19) (2018)
Liang Zhao, Shaogui Wu, Jiawen Jiang, Wencui Li, Jie Luo, Jinyan Li
Novel overlapping subgraph clustering for the detection of antigen epitopes. Bioinform. 34 (12) (2018)
Buzhong Zhang, Jinyan Li, Qiang Lü
Prediction of 8-state protein secondary structures by a novel deep learning architecture. BMC Bioinform. 19 (1) (2018)
Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong
Introduction to Selected Papers from GIW2018. J. Bioinform. Comput. Biol. 16 (6) (2018)
Quanya Liu, Peng Chen, Bing Wang, Jun Zhang, Jinyan Li
Hot spot prediction in protein-protein interactions by an ensemble system. BMC Syst. Biol. 12 (9) (2018)
Jessica S. Rahman, Jinyan Li, Juanying Xie, Shoshana Fogelman, Michael Blumenstein
Connectivity Based Method for Clustering Microbial Communities from Metagenomics Data of Water and Soil Samples. IJCNN (2018)
Hui Peng, Yi Zheng, Zhixun Zhao, Tao Liu, Jinyan Li
Recognition of CRISPR/Cas9 off-target sites through ensemble learning of uneven mismatch distributions. Bioinform. 34 (17) (2018)
Quanya Liu, Peng Chen, Bing Wang, Jun Zhang, Jinyan Li
dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions. BMC Bioinform. 19 (1) (2018)
Qian Liu, Shameek Ghosh, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
Discovering pan-correlation patterns from time course data sets by efficient mining algorithms. Computing 100 (4) (2018)
Jinyan Li
Version Space Completeness for Novel Hypothesis Induction in Biomedical Applications. IJCNN (2018)
Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Jie Yin, Jinyan Li
Predicting adverse drug reactions of combined medication from heterogeneous pharmacologic databases. BMC Bioinform. (19) (2018)
Xiaocai Zhang, Yuansheng Liu, Yi Zheng, Zhixun Zhao, Jinyan Li, Yang Liu
Distinction Between Ships and Icebergs in SAR Images Using Ensemble Loss Trained Convolutional Neural Networks. Australasian Conference on Artificial Intelligence (2018)
Hui Peng, Yi Zheng, Michael Blumenstein, Dacheng Tao, Jinyan Li
CRISPR/Cas9 cleavage efficiency regression through boosting algorithms and Markov sequence profiling. Bioinform. 34 (18) (2018)
Qingfeng Chen, Yiqi Wang, Baoshan Chen, Chengqi Zhang, Lusheng Wang, Jinyan Li
Using propensity scores to predict the kinases of unannotated phosphopeptides. Knowl. Based Syst. 135 (2017)
Hui Peng, Chaowang Lan, Yi Zheng, Gyorgy Hutvagner, Dacheng Tao, Jinyan Li
Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite. BMC Bioinform. 18 (1) (2017)
Yuansheng Liu, Hui Peng, Limsoon Wong, Jinyan Li
High-speed and high-ratio referential genome compression. Bioinform. 33 (21) (2017)
Shameek Ghosh, Jinyan Li, Longbing Cao, Kotagiri Ramamohanarao
Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns. J. Biomed. Informatics 66 (2017)
Liang Zhao, Qingfeng Chen, Wencui Li, Peng Jiang, Limsoon Wong, Jinyan Li
MapReduce for accurate error correction of next-generation sequencing data. Bioinform. 33 (23) (2017)
Jing Ren, Jiangning Song, John Ellis, Jinyan Li
Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences. BMC Genom. 18 (S2) (2017)
Qingfeng Chen, Chaowang Lan, Baoshan Chen, Lusheng Wang, Jinyan Li, Chengqi Zhang
Exploring Consensus RNA Substructural Patterns Using Subgraph Mining. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Zili Zhou, Guandong Xu, Wenhao Zhu, Jinyan Li, Wu Zhang
Structure embedding for knowledge base completion and analytics. IJCNN (2017)
Yi Zheng, Shameek Ghosh, Jinyan Li
An Optimized Drug Similarity Framework for Side-effect Prediction. CinC (2017)
Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li
Hypotension Risk Prediction via Sequential Contrast Patterns of ICU Blood Pressure. IEEE J. Biomed. Health Informatics 20 (5) (2016)
Chen Wang, Yong Fang, Jinyan Li
Estimation of NON-WSSUS Channel for OFDM System: Exploiting Support Correlations through a Novel Adaptive Weighted Predict-Re-Estimate L1 Minimization. J. Commun. 11 (2) (2016)
Qian Liu, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
Efficient Mining of Pan-Correlation Patterns from Time Course Data. ADMA (2016)
Yi Zheng, Chaowang Lan, Hui Peng, Jinyan Li
Using constrained information entropy to detect rare adverse drug reactions from medical forums. EMBC (2016)
Qingfeng Chen, Chaowang Lan, Jinyan Li, Baoshan Chen, Lusheng Wang, Chengqi Zhang
Depth-First Search Encoding of RNA Substructures. ICIC (1) (2016)
Shameek Ghosh, Hung T. Nguyen, Jinyan Li
Predicting short-term ICU outcomes using a sequential contrast motif based classification framework. EMBC (2016)
Juanying Xie, Mingzhao Wang, Ying Zhou, Jinyan Li
Coordinating Discernibility and Independence Scores of Variables in a 2D Space for Efficient and Accurate Feature Selection. ICIC (3) (2016)
Shameek Ghosh, Yi Zheng, Thorsten Lammers, Ying Ying Chen, Carolyn Fitzmaurice, Scott Johnston, Jinyan Li
Deriving Public Sector Workforce Insights: A Case Study Using Australian Public Sector Employment Profiles. ADMA (2016)
Peng Chen, ShanShan Hu, Jun Zhang, Xin Gao, Jinyan Li, Junfeng Xia, Bing Wang
A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (5) (2016)
Chaowang Lan, Qingfeng Chen, Jinyan Li
Grouping miRNAs of similar functions via weighted information content of gene ontology. BMC Bioinform. 17 (S-19) (2016)
Zhi-Qin Zhao, Guo-Sheng Han, Zu-Guo Yu, Jinyan Li
Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization. Comput. Biol. Chem. 57 (2015)
Chengjun Xie, Jie Zhang, Rui Li, Jinyan Li, Peilin Hong, Junfeng Xia, Peng Chen
Automatic classification for field crop insects via multiple-task sparse representation and multiple-kernel learning. Comput. Electron. Agric. 119 (2015)
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Renhua Song, Qian Liu, Tao Liu, Jinyan Li
Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships. BMC Genom. 16 (S-2) (2015)
Chunxu Xu, Yong-Jin Liu, Qian Sun, Jinyan Li, Ying He
Geodesic Voronoi Diagrams with Polyline Generators. SGP Posters (2014)
Qian Liu, Zhenhua Li, Jinyan Li
Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts. BMC Bioinform. 15 (S-16) (2014)
Jing Ren, John Ellis, Jinyan Li
Influenza A HA's conserved epitopes and broadly neutralizing antibodies: A prediction method. J. Bioinform. Comput. Biol. 12 (5) (2014)
Liang Zhao, Steven C. H. Hoi, Zhenhua Li, Limsoon Wong, Hung T. Nguyen, Jinyan Li
Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li
Predicting Heart Beats using Co-occurring Constrained Sequential Patterns. CinC (2014)
Wei Wei, Junfu Yin, Jinyan Li, Longbing Cao
Modeling Asymmetry and Tail Dependence among Multiple Variables by Using Partial Regular Vine. SDM (2014)
Jing Ren, Qian Liu, John Ellis, Jinyan Li
Tertiary structure-based prediction of conformational B-cell epitopes through B factors. Bioinform. 30 (12) (2014)
Yuanchun Zhou, MingJie Tang, Weike Pan, Jinyan Li, Weihang Wang, Jing Shao, Liang Wu, Jianhui Li, Qiang Yang, Baoping Yan
Bird Flu Outbreak Prediction via Satellite Tracking. IEEE Intell. Syst. 29 (4) (2014)
Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. BMC Bioinform. 15 (2014)
Chunxu Xu, Yong-Jin Liu, Qian Sun, Jinyan Li, Ying He
Polyline-sourced Geodesic Voronoi Diagrams on Triangle Meshes. Comput. Graph. Forum 33 (7) (2014)
Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li
Risk Prediction for Acute Hypotensive Patients by Using Gap Constrained Sequential Contrast Patterns. AMIA (2014)
Chuanxi Li, Peng Chen, Rujing Wang, Xiu-Jie Wang, Yaru Su, Jinyan Li
PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology. Int. J. Data Min. Bioinform. 10 (1) (2014)
Huifeng Wei, Gelin Zhang, Peiguang Yan, Jiang Li, Xinben Zhang, Weijun Tong, Jie Luo, Jinyan Li, Kangkang Chen
A seven-core photonic crystal fiber with high beam quality. OFC/NFOEC (2013)
Zhenhua Li, Ying He, Qian Liu, Liang Zhao, Limsoon Wong, Chee Keong Kwoh, Hung T. Nguyen, Jinyan Li
Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. BMC Bioinform. 14 (S-16) (2013)
Qian Liu, Chee Keong Kwoh, Jinyan Li
Contacts and B Factor. J. Chem. Inf. Model. 53 (11) (2013)
Wei Wei, Jinyan Li, Longbing Cao, Jingguang Sun, Chunming Liu, Mu Li
Optimal Allocation of High Dimensional Assets through Canonical Vines. PAKDD (1) (2013)
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinform. 13 (2012)
Peng Chen, Limsoon Wong, Jinyan Li
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Zhenhua Li, Ying He, Longbing Cao, Limsoon Wong, Jinyan Li
Conservation of water molecules in protein binding interfaces. Int. J. Bioinform. Res. Appl. 8 (3/4) (2012)
Wei Wei, Xuhui Fan, Jinyan Li, Longbing Cao
Model the complex dependence structures of financial variables by using canonical vine. CIKM (2012)
Liang Zhao, Limsoon Wong, Lanyuan Lu, Steven C. H. Hoi, Jinyan Li
B-cell epitope prediction through a graph model. BMC Bioinform. 13 (S-17) (2012)
Zhenhua Li, Limsoon Wong, Jinyan Li
DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. BMC Syst. Biol. 5 (S-1) (2011)
Liang Zhao, Limsoon Wong, Jinyan Li
Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Kelvin Sim, Guimei Liu, Vivekanand Gopalkrishnan, Jinyan Li
A case study on financial ratios via cross-graph quasi-bicliques. Inf. Sci. 181 (1) (2011)
MingJie Tang, Yuanchun Zhou, Jinyan Li, Weihang Wang, Peng Cui, YuanSheng Hou, Ze Luo, Jianhui Li, Fuming Lei, Baoping Yan
Exploring the wild birds' migration data for the disease spread study of H5N1: a clustering and association approach. Knowl. Inf. Syst. 27 (2) (2011)
David Lo, Jinyan Li, Limsoon Wong, Siau-Cheng Khoo
Mining Iterative Generators and Representative Rules for Software Specification Discovery. IEEE Trans. Knowl. Data Eng. 23 (2) (2011)
Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinform. 27 (18) (2011)
Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong
Pattern Space Maintenance for Data Updates and Interactive Mining. Comput. Intell. 26 (3) (2010)
Scott Mann, Jinyan Li, Yi-Ping Phoebe Chen
Insights into Bacterial Genome Composition through Variable Target GC Content Profiling. J. Comput. Biol. 17 (1) (2010)
Peng Chen, Jinyan Li
Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information. BMC Bioinform. 11 (2010)
Qian Liu, Jinyan Li
Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective. BMC Bioinform. 11 (2010)
Fei Luo, Juan Liu, Jinyan Li
Discovering conditional co-regulated protein complexes by integrating diverse data sources. BMC Syst. Biol. 4 (S-2) (2010)
Xiaowen Liu, Jinyan Li, Lusheng Wang
Modeling Protein Interacting Groups by Quasi-Bicliques: Complexity, Algorithm, and Application. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (2) (2010)
MingJie Tang, Weihang Wang, Yexi Jiang, Yuanchun Zhou, Jinyan Li, Peng Cui, Ying Liu, Baoping Yan
Birds Bring Flues? Mining Frequent and High Weighted Cliques from Birds Migration Networks. DASFAA (2) (2010)
Jinyan Li, Qian Liu, Tao Zeng
Negative correlations in collaboration: concepts and algorithms. KDD (2010)
Guimei Liu, Kelvin Sim, Jinyan Li, Limsoon Wong
Efficient mining of distance-based subspace clusters. Stat. Anal. Data Min. 2 (5-6) (2009)
Jinyan Li, Qian Liu
'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces. Bioinform. 25 (6) (2009)
Kelvin Sim, Jinyan Li, Vivekanand Gopalkrishnan, Guimei Liu
Mining maximal quasi-bicliques: Novel algorithm and applications in the stock market and protein networks. Stat. Anal. Data Min. 2 (4) (2009)
MingJie Tang, Yuanchun Zhou, Peng Cui, Weihang Wang, Jinyan Li, Haiting Zhang, YuanSheng Hou, Baoping Yan
Discovery of Migration Habitats and Routes of Wild Bird Species by Clustering and Association Analysis. ADMA (2009)
Qian Liu, Yi-Ping Phoebe Chen, Jinyan Li
High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks. BIBM (2009)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jinyan Li