Kengo Sato

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 12

Top Topics

Machine Learning

Secondary Structure

Top Venues

Briefings Bioinform.

J. Bioinform. Comput. Biol.

Publications

Kengo Sato, Michiaki Hamada
Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery. Briefings Bioinform. 24 (4) (2023)
Soichiro Nishiyama, Kengo Sato, Ryutaro Tao
Integer programming for selecting set of informative markers in paternity inference. BMC Bioinform. 23 (1) (2022)
Kengo Sato, Yuki Kato
Prediction of RNA secondary structure including pseudoknots for long sequences. Briefings Bioinform. 23 (1) (2022)
Kengo Sato, Hiroki Terashima, Shin'ya Nishida, Yoshihiro Watanabe
E.S.P.: Extra-Sensory Puck in Air Hockey using the Projection-Based Illusion. SIGGRAPH ASIA Emerging Technologies (2022)
Tomoo Inubushi, Masanori Ito, Yutaro Mori, Masami Futatsubashi, Kengo Sato, Shigeru Ito, Masamichi Yokokura, Tomomi Shinke, Yosuke Kameno, Akihiro Kakimoto, Toshihiko Kanno, Hiroyuki Okada, Yasuomi Ouchi, Etsuji Yoshikawa
Neural correlates of head restraint: Unsolicited neuronal activation and dopamine release. NeuroImage 224 (2021)
Maya Hirohara, Yutaka Saito, Yuki Koda, Kengo Sato, Yasubumi Sakakibara
Convolutional neural network based on SMILES representation of compounds for detecting chemical motif. BMC Bioinform. (19) (2018)
Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong
Introduction to Selected Papers from GIW2018. J. Bioinform. Comput. Biol. 16 (6) (2018)
Manato Akiyama, Kengo Sato, Yasubumi Sakakibara
A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model. J. Bioinform. Comput. Biol. 16 (6) (2018)
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data. Bioinform. 33 (2) (2017)
Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai
Rtools: a web server for various secondary structural analyses on single RNA sequences. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Mariko Tsuchiya, Kojiro Amano, Masaya Abe, Misato Seki, Sumitaka Hase, Kengo Sato, Yasubumi Sakakibara
SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing. Bioinform. 32 (12) (2016)
Shotaro Kumozaki, Kengo Sato, Yasubumi Sakakibara
A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Toyotaro Tokimoto, Kengo Sato, Shiro Suyama, Hirotsugu Yamamoto
High-frame-rate LED display with pulse-width modulation by use of nonlinear clock. GCCE (2013)
Yasubumi Sakakibara, Tsuyoshi Hachiya, Miho Uchida, Nobuyoshi Nagamine, Yohei Sugawara, Masahiro Yokota, Masaomi Nakamura, Kris Popendorf, Takashi Komori, Kengo Sato
COPICAT: a software system for predicting interactions between proteins and chemical compounds. Bioinform. 28 (5) (2012)
Takuya Watanabe, Kengo Sato, Fumiko Itoh, Kohei Wakabayashi, Masayoshi Shichiri, Tsutomu Hirano
Endogenous Bioactive Peptides as Potential Biomarkers for Atherosclerotic Coronary Heart Disease. Sensors 12 (4) (2012)
Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara
DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition. Bioinform. 28 (24) (2012)
Masaomi Nakamura, Tsuyoshi Hachiya, Yutaka Saito, Kengo Sato, Yasubumi Sakakibara
An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. BMC Bioinform. 13 (S-17) (2012)
Yuki Kato, Kengo Sato, Kiyoshi Asai, Tatsuya Akutsu
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Yutaka Saito, Kengo Sato, Yasubumi Sakakibara
Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures. BMC Bioinform. 12 (S-1) (2011)
Michiaki Hamada, Kengo Sato, Kiyoshi Asai
Improving the accuracy of predicting secondary structure for aligned RNA sequences. Nucleic Acids Res. 39 (2) (2011)
Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C. Frith, Kiyoshi Asai
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Unyanee Poolsap, Yuki Kato, Kengo Sato, Tatsuya Akutsu
Using binding Profiles to Predict binding sites of Target RNAs. J. Bioinform. Comput. Biol. 9 (6) (2011)
Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. Bioinform. 27 (13) (2011)
Yutaka Saito, Kengo Sato, Yasubumi Sakakibara
Robust and accurate prediction of noncoding RNAs from aligned sequences. BMC Bioinform. 11 (S-7) (2010)
Michiaki Hamada, Kengo Sato, Kiyoshi Asai
Prediction of RNA secondary structure by maximizing pseudo-expected accuracy. BMC Bioinform. 11 (2010)
Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming. Bioinform. 26 (18) (2010)
Kengo Sato, Tom Whitington, Timothy L. Bailey, Paul Horton
Improved prediction of transcription binding sites from chromatin modification data. CIBCB (2010)
Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara
A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures. J. Bioinform. Comput. Biol. 8 (4) (2010)
Yohei Okada, Kengo Sato, Yasubumi Sakakibara
Improvement of Structure Conservation Index with Centroid Estimators. Pacific Symposium on Biocomputing (2010)
Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai
Prediction of RNA secondary structure using generalized centroid estimators. Bioinform. 25 (4) (2009)
Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara
A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. WABI (2009)
Yasubumi Sakakibara, Kengo Sato
Sequence and Structural Analyses for Functional Non-coding RNAs. Algorithmic Bioprocesses (2009)
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
Predictions of RNA secondary structure by combining homologous sequence information. Bioinform. 25 (12) (2009)
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. Bioinform. 25 (24) (2009)
Kengo Sato, Michiaki Hamada, Kiyoshi Asai, Toutai Mituyama
CENTROIDFOLD: a web server for RNA secondary structure prediction. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara
Directed acyclic graph kernels for structural RNA analysis. BMC Bioinform. 9 (2008)
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama
Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato
Stem Kernels for RNA Sequence Analyses. J. Bioinform. Comput. Biol. 5 (5) (2007)
Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato
Stem Kernels for RNA Sequence Analyses. BIRD (2007)
Kengo Sato, Yasubumi Sakakibara
RNA secondary structural alignment with conditional random fields. ECCB/JBI (2005)
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinform. 21 (11) (2005)
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. CSB (2004)
Hiroyuki Okamoto, Kengo Sato, Hiroaki Saito
Preferential Presentation of Japanese Near-synonyms using Definition Statements. IWP@ACL (2003)
Kengo Sato, Hiroaki Saito
Extracting Word Sequence Correspondences with Support Vector Machines. COLING (2002)
Kengo Sato, Masakazu Nakanishi
Maximum Entropy Model Learning of the Translation Rules. COLING-ACL (1998)
Shiho Nobesawa, Junya Tsutsumi, Sun Da Jiang, Tomohisa Sano, Kengo Sato, Masakazu Nakanishi
Segmenting Sentences into Linky Strings Using D-bigram Statistics. COLING (1996)