Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming.
Yuki KatoKengo SatoKiyoshi AsaiTatsuya AkutsuPublished in: Nucleic Acids Res. (2012)
Keyphrases
- integer programming
- np hard
- linear programming
- production planning
- ai planning
- cutting plane
- constraint programming
- cutting plane algorithm
- set covering
- set covering problem
- lagrangian relaxation
- network flow
- valid inequalities
- inference problems
- rna secondary structure prediction
- set partitioning
- linear programming relaxation
- integer program
- column generation