SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.
Mariko TsuchiyaKojiro AmanoMasaya AbeMisato SekiSumitaka HaseKengo SatoYasubumi SakakibaraPublished in: Bioinform. (2016)
Keyphrases
- k means
- clustering method
- clustering algorithm
- learning algorithm
- computational complexity
- dynamic programming
- cost function
- hierarchical clustering
- mapping function
- subspace clustering
- matching algorithm
- detection algorithm
- expectation maximization
- segmentation algorithm
- particle swarm optimization
- fuzzy clustering
- probabilistic model
- clustering analysis
- optimal solution