RNA secondary structural alignment with conditional random fields.
Kengo SatoYasubumi SakakibaraPublished in: ECCB/JBI (2005)
Keyphrases
- conditional random fields
- rna sequences
- graphical models
- rna secondary structures
- probabilistic model
- sequence labeling
- long range
- random fields
- information extraction
- hidden markov models
- crf model
- multiple alignment
- higher order
- secondary structure
- maximum entropy
- pairwise
- named entity recognition
- generative model
- image labeling
- markov random field
- structured prediction
- free energy
- error correcting output coding
- protein fold recognition
- segmentation method
- markov networks
- sequence alignment
- structured learning
- parameter learning
- multi class
- active learning
- image segmentation
- belief propagation