Hisanori Kiryu

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 8

Top Topics

Secondary Structure

Unsupervised Clustering

Top Venues

Briefings Bioinform.

Publications

Yanting Zhang, Hisanori Kiryu
MODEC: an unsupervised clustering method integrating omics data for identifying cancer subtypes. Briefings Bioinform. 23 (6) (2022)
Yasuhiro Kojima, Hirotaka Matsumoto, Hisanori Kiryu
Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations. Bioinform. 36 (1) (2020)
Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction. BMC Bioinform. (3) (2019)
Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima
TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column. Algorithms Mol. Biol. 14 (1) (2019)
Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. Bioinform. 33 (15) (2017)
Risa Kawaguchi, Hisanori Kiryu
Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome. BMC Bioinform. 17 (2016)
Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai
Rtools: a web server for various secondary structural analyses on single RNA sequences. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Hirotaka Matsumoto, Hisanori Kiryu
SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation. BMC Bioinform. 17 (2016)
Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai
Generalized Centroid Estimators in Bioinformatics CoRR (2013)
Hisanori Kiryu, Kiyoshi Asai
Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations. Bioinform. 28 (8) (2012)
Hisanori Kiryu
Sufficient statistics and expectation maximization algorithms in phylogenetic tree models. Bioinform. 27 (17) (2011)
Hisanori Kiryu, Goro Terai, Osamu Imamura, Hiroyuki Yoneyama, Kenji Suzuki, Kiyoshi Asai
A detailed investigation of accessibilities around target sites of siRNAs and miRNAs. Bioinform. 27 (13) (2011)
Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai
Prediction of RNA secondary structure using generalized centroid estimators. Bioinform. 25 (4) (2009)
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
Predictions of RNA secondary structure by combining homologous sequence information. Bioinform. 25 (12) (2009)
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. Bioinform. 25 (24) (2009)
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama
Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
Rfold: an exact algorithm for computing local base pairing probabilities. Bioinform. 24 (3) (2008)
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
A fast structural multiple alignment method for long RNA sequences. BMC Bioinform. 9 (2008)
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
Robust prediction of consensus secondary structures using averaged base pairing probability matrices. Bioinform. 23 (4) (2007)
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai
Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinform. 23 (13) (2007)
Hisanori Kiryu, Taku Oshima, Kiyoshi Asai
Extracting relations between promoter sequences and their strengths from microarray data. Bioinform. 21 (7) (2005)