Itoshi Nikaido

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 5

Top Topics

Complex Biological Systems

Tensor Decomposition

Delaunay Triangulation

Top Venues

J. Open Source Softw.

Publications

Koki Tsuyuzaki, Kentaro Yamamoto, Yu Toyoshima, Hirofumi Sato, Manami Kanamori, Takayuki Teramoto, Takeshi Ishihara, Yuichi Iino, Itoshi Nikaido
WormTensor: a clustering method for time-series whole-brain activity data from C. elegans. BMC Bioinform. 24 (1) (2023)
Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido
Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data. BMC Bioinform. 24 (1) (2023)
Koki Tsuyuzaki, Itoshi Nikaido
nnTensor: An R package for non-negative matrix/tensor decomposition. J. Open Source Softw. 8 (86) (2023)
Koki Tsuyuzaki, Itoshi Nikaido
Biological Systems as Heterogeneous Information Networks: A Mini-review and Perspectives. CoRR (2017)
Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. Bioinform. 33 (15) (2017)
Koki Tsuyuzaki, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki, Itoshi Nikaido
MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis. BMC Bioinform. 16 (2015)
Itoshi Nikaido, Chika Saito, Akiko Wakamoto, Yasuhiro Tomaru, Takahiro Arakawa, Yoshihide Hayashizaki, Yasushi Okazaki
EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes. Nucleic Acids Res. 32 (Database-Issue) (2004)