Yasuo Tabei

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 55

Top Topics

Triangle Inequality

Metabolic Pathways

Top Venues

Publications

Takaaki Nishimoto, Yasuo Tabei
Dynamic Suffix Array in Optimal Compressed Space. CoRR (2024)
Kotaro Ii, Hiroto Saigo, Yasuo Tabei
A Branch-and-Bound Approach to Efficient Classification and Retrieval of Documents. ICPRAM (2024)
Rory P. Bunker, Vo Nguyen Le Duy, Yasuo Tabei, Ichiro Takeuchi, Keisuke Fujii
Multi-agent statistical discriminative sub-trajectory mining and an application to NBA basketball. CoRR (2023)
Takaaki Nishimoto, Yasuo Tabei
LZRR: LZ77 parsing with right reference. Inf. Comput. 285 (Part) (2022)
Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei
An Optimal-Time RLBWT Construction in BWT-runs Bounded Space. CoRR (2022)
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Hiroyuki Hanada, Yasuo Tabei, Ichiro Takeuchi
Stat-DSM: Statistically Discriminative Sub-Trajectory Mining With Multiple Testing Correction. IEEE Trans. Knowl. Data Eng. 34 (3) (2022)
Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei
An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space. ICALP (2022)
Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
Block trees. J. Comput. Syst. Sci. 117 (2021)
Shunsuke Kanda, Yasuo Tabei
DyFT: a dynamic similarity search method on integer sketches. Knowl. Inf. Syst. 63 (11) (2021)
Koh Takeuchi, Masaaki Imaizumi, Shunsuke Kanda, Yasuo Tabei, Keisuke Fujii, Ken Yoda, Masakazu Ishihata, Takuya Maekawa
Fréchet Kernel for Trajectory Data Analysis. SIGSPATIAL/GIS (2021)
Takaaki Nishimoto, Yasuo Tabei
R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space. CPM (2021)
Takaaki Nishimoto, Yasuo Tabei
Optimal-Time Queries on BWT-Runs Compressed Indexes. ICALP (2021)
Mirai Takayanagi, Yasuo Tabei, Einoshin Suzuki, Hiroto Saigo
Sparse Nonnegative Interaction Models. IEEE Access 9 (2021)
Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei
Succinct Trit-array Trie for Scalable Trajectory Similarity Search. CoRR (2020)
Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei
Succinct Trit-array Trie for Scalable Trajectory Similarity Search. SIGSPATIAL/GIS (2020)
Shunsuke Kanda, Yasuo Tabei
Dynamic Similarity Search on Integer Sketches. ICDM (2020)
Shunsuke Kanda, Yasuo Tabei
Dynamic Similarity Search on Integer Sketches. CoRR (2020)
Ryoichiro Yafune, Daisuke Sakuma, Mirai Takayanagi, Yasuo Tabei, Noritaka Saito, Hiroto Saigo
Automatically mining Relevant Variable Interactions Via Sparse Bayesian Learning. ICPR (2020)
Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma
PARASOL: a hybrid approximation approach for scalable frequent itemset mining in streaming data. J. Intell. Inf. Syst. 55 (1) (2020)
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
A compressed dynamic self-index for highly repetitive text collections. Inf. Comput. 273 (2020)
Takaaki Nishimoto, Yasuo Tabei
Faster Queries on BWT-runs Compressed Indexes. CoRR (2020)
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
Space-Efficient Feature Maps for String Alignment Kernels. Data Sci. Eng. 5 (2) (2020)
Takaaki Nishimoto, Yasuo Tabei
Enumeration of LCP values, LCP intervals and Maximal repeats in BWT-runs Bounded Space. CoRR (2020)
Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa
Dynamic Path-decomposed Tries. ACM J. Exp. Algorithmics 25 (2020)
Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi
Network-based characterization of drug-protein interaction signatures with a space-efficient approach. BMC Syst. Biol. (2) (2019)
Shunsuke Kanda, Yasuo Tabei
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches. CoRR (2019)
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi
Statistically Discriminative Sub-trajectory Mining with Multiple Testing Correction. SIGSPATIAL/GIS (2019)
Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa
Dynamic Path-Decomposed Tries. CoRR (2019)
Takaaki Nishimoto, Yasuo Tabei
Conversion from RLBWT to LZ77. CoRR (2019)
Shunsuke Kanda, Yasuo Tabei
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches. IEEE BigData (2019)
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
Space-Efficient Feature Maps for String Alignment Kernels. ICDM (2019)
Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma
Approximate-Closed-Itemset Mining for Streaming Data Under Resource Constraint. CoRR (2019)
Takaaki Nishimoto, Yasuo Tabei
Conversion from RLBWT to LZ77. CPM (2019)
Takaaki Nishimoto, Yasuo Tabei
LZRR: LZ77 Parsing with Right Reference. DCC (2019)
Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm. Bioinform. 35 (14) (2019)
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Nishi, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi
Statistically Discriminative Sub-trajectory Mining. CoRR (2019)
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
Scalable Alignment Kernels via Space-Efficient Feature Maps. CoRR (2018)
Takaaki Nishimoto, Yasuo Tabei
LZRR: LZ77 Parsing with Right Reference. CoRR (2018)
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
A Dynamic Compressed Self-Index for Highly Repetitive Text Collections. DCC (2018)
Mirai Takayanagi, Yasuo Tabei, Hiroto Saigo
Entire Regularization Path for Sparse Nonnegative Interaction Model. ICDM (2018)
Yasuo Tabei
Scalable Machine Learning on Compact Data Representations. ISITA (2018)
Naoya Takeishi, Yoshinobu Kawahara, Yasuo Tabei, Takehisa Yairi
Bayesian Dynamic Mode Decomposition. IJCAI (2017)
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
A compressed dynamic self-index for highly repetitive text collections. CoRR (2017)
Yasuo Tabei, Simon J. Puglisi
Scalable Similarity Search for Molecular Descriptors. SISAP (2017)
Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto
siEDM: an efficient string index and search algorithm for edit distance with moves. CoRR (2016)
Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices. CoRR (2016)
Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto
siEDM: An Efficient String Index and Search Algorithm for Edit Distance with Moves. Algorithms 9 (2) (2016)
Yasuo Tabei, Simon J. Puglisi
Scalable Similarity Search for Molecular Descriptors. CoRR (2016)
Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera
metabolic pathway reconstruction. Bioinform. 32 (12) (2016)
Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices. KDD (2016)
Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
Queries on LZ-Bounded Encodings. DCC (2015)
Djamal Belazzougui, Patrick Hagge Cording, Simon J. Puglisi, Yasuo Tabei
Access, Rank, and Select in Grammar-compressed Strings. ESA (2015)
Yoshihiro Yamanishi, Yasuo Tabei, Masaaki Kotera
pathway reconstruction using regioisomer-sensitive graph alignments. Bioinform. 31 (12) (2015)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Online Self-Indexed Grammar Compression. SPIRE (2015)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Online Self-Indexed Grammar Compression. CoRR (2015)
Shirou Maruyama, Yasuo Tabei
Fully Online Grammar Compression in Constant Space. DCC (2014)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Improved ESP-index: A Practical Self-index for Highly Repetitive Texts. SEA (2014)
Shirou Maruyama, Yasuo Tabei
Fully Online Grammar Compression in Constant Space. CoRR (2014)
Koji Maeda, Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Finding Ambiguous Patterns on Grammar Compressed String. JSAI-isAI Workshops (2014)
Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
Queries on LZ-Bounded Encodings. CoRR (2014)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Improved ESP-index: a practical self-index for highly repetitive texts. CoRR (2014)
Djamal Belazzougui, Simon J. Puglisi, Yasuo Tabei
Rank, select and access in grammar-compressed strings. CoRR (2014)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Online Pattern Matching for String Edit Distance with Moves. CoRR (2014)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30 (12) (2014)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Online Pattern Matching for String Edit Distance with Moves. SPIRE (2014)
Shirou Maruyama, Yasuo Tabei, Hiroshi Sakamoto, Kunihiko Sadakane
Fully-Online Grammar Compression. SPIRE (2013)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7 (S-6) (2013)
Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi
Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints. KDD (2013)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto
reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29 (13) (2013)
Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto
A Succinct Grammar Compression. CPM (2013)
Yasuo Tabei, Yoshihiro Yamanishi
Scalable prediction of compound-protein interactions using minwise hashing. BMC Syst. Biol. 7 (S-6) (2013)
Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto
A Succinct Grammar Compression CoRR (2013)
Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi
Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. 7 (S-6) (2013)
Yasuo Tabei
Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches. WABI (2012)
Yasuo Tabei, Edouard Pauwels, Véronique Stoven, Kazuhiro Takemoto, Yoshihiro Yamanishi
Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers. Bioinform. 28 (18) (2012)
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
Variable-Length Codes for Space-Efficient Grammar-Based Compression. SPIRE (2012)
Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii
PoSSuM: a database of similar protein-ligand binding and putative pockets. Nucleic Acids Res. 40 (Database-Issue) (2012)
Yasuo Tabei, Koji Tsuda
Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees. SDM (2011)
Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda
LGM: Mining Frequent Subgraphs from Linear Graphs CoRR (2011)
Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda
LGM: Mining Frequent Subgraphs from Linear Graphs. PAKDD (2) (2011)
Yasuo Tabei, Takeaki Uno, Masashi Sugiyama, Koji Tsuda
Single versus Multiple Sorting in All Pairs Similarity Search. ACML (2010)
Yasuo Tabei, Kiyoshi Asai
A local multiple alignment method for detection of non-coding RNA sequences. Bioinform. 25 (12) (2009)
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama
Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
A fast structural multiple alignment method for long RNA sequences. BMC Bioinform. 9 (2008)
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai
Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinform. 23 (13) (2007)
Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Bioinform. 22 (14) (2006)