Francois Berenger

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 10

Top Topics

Single Parameter

Virtual Screening

High Throughput

Top Venues

J. Cheminformatics

J. Chem. Inf. Model.

Publications

Francois Berenger, Koji Tsuda
3D-Sensitive Encoding of Pharmacophore Features. J. Chem. Inf. Model. 63 (8) (2023)
Francois Berenger, Koji Tsuda
Molecular generation by Fast Assembly of (Deep)SMILES fragments. J. Cheminformatics 13 (1) (2021)
Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi
Lean-Docking: Exploiting Ligands' Predicted Docking Scores to Accelerate Molecular Docking. J. Chem. Inf. Model. 61 (5) (2021)
Francois Berenger, Yoshihiro Yamanishi
Ranking Molecules with Vanishing Kernels and a Single Parameter: Active Applicability Domain Included. J. Chem. Inf. Model. 60 (9) (2020)
Francois Berenger, Yoshihiro Yamanishi
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data. J. Chem. Inf. Model. 59 (1) (2019)
Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm. Bioinform. 35 (14) (2019)
Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi
Chemoinformatics and structural bioinformatics in OCaml. J. Cheminformatics 11 (1) (2019)
Francois Berenger, David Simoncini, Arnout R. D. Voet, Rojan Shrestha, Kam Y. J. Zhang
Fragger: a protein fragment picker for structural queries. F1000Research 6 (2017)
Huisong Li, Francois Berenger, Bor-Yuh Evan Chang, Xavier Rival
Semantic-directed clumping of disjunctive abstract states. POPL (2017)
Francois Berenger, Oanh Vu, Jens Meiler
Consensus queries in ligand-based virtual screening experiments. J. Cheminformatics 9 (1) (2017)
Arnout R. D. Voet, Ashutosh Kumar, Francois Berenger, Kam Y. J. Zhang
Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4. J. Comput. Aided Mol. Des. 28 (4) (2014)
Francois Berenger, Arnout R. D. Voet, Xiao Yin Lee, Kam Y. J. Zhang
A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening. J. Cheminformatics 6 (1) (2014)
Francois Berenger, Rojan Shrestha, Yong Zhou, David Simoncini, Kam Y. J. Zhang
Durandal: Fast exact clustering of protein decoys. J. Comput. Chem. 33 (4) (2012)
Francois Berenger, Yong Zhou, Rojan Shrestha, Kam Y. J. Zhang
Entropy-accelerated exact clustering of protein decoys. Bioinform. 27 (7) (2011)
Francois Berenger, Camille Coti, Kam Y. J. Zhang
PAR: a PARallel and distributed job crusher. Bioinform. 26 (22) (2010)