Susumu Goto

Publication Activity (10 Years)

Years Active: 1992-2022
Publications (10 Years): 10

Top Topics

Chemical Compounds

International Standard

Modular Architecture

Top Venues

Nucleic Acids Res.

J. Chem. Inf. Model.

BMC Syst. Biol.

Publications

Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama
TogoID: an exploratory ID converter to bridge biological datasets. Bioinform. 38 (17) (2022)
Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa, Susumu Goto, Hiroyuki Ogata
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold. Bioinform. 36 (7) (2020)
Shuichi Kawashima, Toshiaki Katayama, Yuki Moriya, Shinobu Okamoto, Yasunori Yamamoto, Susumu Goto
Integrated Growth Media Database by Standardizing Ingredient Information. SWAT4HCLS (2019)
Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama
The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47 (Database-Issue) (2019)
Masanobu Inubushi, Susumu Goto
Transferring Reservoir Computing: Formulation and Application to Fluid Physics. ICANN (Workshop) (2019)
Takeshi Ooshida, Susumu Goto, Michio Otsuki
Collective Motion of Repulsive Brownian Particles in Single-File Diffusion with and without Overtaking. Entropy 20 (8) (2018)
Yosuke Nishimura, Takashi Yoshida, Megumi Kuronishi, Hideya Uehara, Hiroyuki Ogata, Susumu Goto
ViPTree: the viral proteomic tree server. Bioinform. 33 (15) (2017)
Yugo Shimizu, Hiroyuki Ogata, Susumu Goto
Discriminating the reaction types of plant type III polyketide synthases. Bioinform. 33 (13) (2017)
Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama
jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45 (Database-Issue) (2017)
Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56 (3) (2016)
Minoru Kanehisa, Susumu Goto, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe
Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42 (Database-Issue) (2014)
Masaaki Kotera, Yosuke Nishimura, Zenichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list. J. Bioinform. Comput. Biol. 12 (6) (2014)
Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya, Ryusuke Sawada, Minoru Kanehisa, Susumu Goto
DINIES: drug-target interaction network inference engine based on supervised analysis. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30 (12) (2014)
Sayaka Mizutani, Yousuke Noro, Masaaki Kotera, Susumu Goto
Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms. Comput. Biol. Chem. 50 (2014)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7 (S-6) (2013)
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto
reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29 (13) (2013)
Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu, Zenichi Nakagawa, Susumu Goto, Minoru Kanehisa
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions. J. Chem. Inf. Model. 53 (3) (2013)
Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi
Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. 7 (S-6) (2013)
Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima, Yuki Moriya, Shujiro Okuda, Michihiro Tanaka, Toshiaki Tokimatsu, Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Minoru Kanehisa, Susumu Goto
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41 (Database-Issue) (2013)
Masataka Takarabe, Masaaki Kotera, Yosuke Nishimura, Susumu Goto, Yoshihiro Yamanishi
Drug target prediction using adverse event report systems: a pharmacogenomic approach. Bioinform. 28 (18) (2012)
Minoru Kanehisa, Susumu Goto, Yoko Sato, Miho Furumichi, Mao Tanabe
KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40 (Database-Issue) (2012)
Sayaka Mizutani, Edouard Pauwels, Véronique Stoven, Susumu Goto, Yoshihiro Yamanishi
Relating drug-protein interaction network with drug side effects. Bioinform. 28 (18) (2012)
Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya, Minoru Kanehisa, Susumu Goto
GENIES: gene network inference engine based on supervised analysis. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions. J. Chem. Inf. Model. 51 (11) (2011)
Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites. BMC Bioinform. 12 (S-14) (2011)
Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa
KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38 (Database-Issue) (2010)
Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. Bioinform. 26 (12) (2010)
Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Masahiro Hattori, Nobuya Tanaka, Minoru Kanehisa, Susumu Goto
SIMCOMP/SUBCOMP: chemical structure search servers for network analyses. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Lasse Folkersen, Diego Diez, Craig E. Wheelock, Jesper Z. Haeggström, Susumu Goto, Per Eriksson, Anders Gabrielsen
GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome. Bioinform. 25 (15) (2009)
Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinform. 25 (12) (2009)
Daichi Shigemizu, Michihiro Araki, Shujiro Okuda, Susumu Goto, Minoru Kanehisa
Extraction and Analysis of Chemical Modification Patterns in Drug Development. J. Chem. Inf. Model. 49 (4) (2009)
C. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinform. 24 (21) (2008)
Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36 (Database-Issue) (2008)
Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa
KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinform. 23 (16) (2007)
Mina Oh, Takuji Yamada, Masahiro Hattori, Susumu Goto, Minoru Kanehisa
Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways. J. Chem. Inf. Model. 47 (4) (2007)
Alex Gutteridge, Minoru Kanehisa, Susumu Goto
Regulation of metabolic networks by small molecule metabolites. BMC Bioinform. 8 (2007)
Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. BMC Bioinform. 8 (2007)
Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa
From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34 (Database-Issue) (2006)
Takuji Yamada, Minoru Kanehisa, Susumu Goto
Extraction of phylogenetic network modules from the metabolic network. BMC Bioinform. 7 (2006)
Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa
ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34 (Database-Issue) (2006)
Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinform. 21 (21) (2005)
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa
Fast and accurate database homology search using upper bounds of local alignment scores. Bioinform. 21 (7) (2005)
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori
The KEGG resource for deciphering the genome. Nucleic Acids Res. 32 (Database-Issue) (2004)
Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
The KEGG databases at GenomeNet. Nucleic Acids Res. 30 (1) (2002)
Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa
LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res. 30 (1) (2002)
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
LIGAND: chemical database of enzyme reactions. Nucleic Acids Res. 28 (1) (2000)
Minoru Kanehisa, Susumu Goto
KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28 (1) (2000)
Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa
KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 27 (1) (1999)
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
LIGAND database for enzymes, compounds and reactions. Nucleic Acids Res. 27 (1) (1999)
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
LIGAND: chemical database for enzyme reactions. Bioinform. 14 (7) (1998)
Barry Zeeberg, Kevin Watanabe, Susumu Goto, Ross A. Overbeek, Larry Kerschberg, George Michaels
Metabolic Pathway Interface to Molecular Biology Databases. SSDBM (1998)
Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi
A Deductive Object-Oriented Language for Integrated Genome Databaser. HICSS (5) (1994)
Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi
Object-Oriented Database with Rule-Based Query Interface for Genomic Computation. DASFAA (1993)
Toshihisa Takagi, Takahiko Suzuki, Susumu Goto, Kazuo Ushijima
Evaluation of a deductive database system for CAD applications. Systems and Computers in Japan 23 (13) (1992)