Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
Yutaka SaitoKengo SatoYasubumi SakakibaraPublished in: BMC Bioinform. (2011)
Keyphrases
- secondary structure
- multiple alignment
- rna sequences
- sequence similarity
- multiple sequence alignment
- genome scale
- secondary structure of proteins
- protein sequences
- rna secondary structures
- graph theoretic
- sequence alignment
- tertiary structure
- computational methods
- amino acids
- protein structure
- high accuracy
- multiple sequence alignments
- structural features
- amino acid sequences
- k means
- protein secondary structure
- protein folding
- self organizing maps
- sequential pattern mining
- computational biology
- psi blast
- solvent accessibility
- biological sequences
- protein structure prediction
- neural network
- dna sequences
- machine learning
- mining sequential patterns
- free energy
- machine learning methods