RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.
Yuki KatoKengo SatoMichiaki HamadaYoshihide WatanabeKiyoshi AsaiTatsuya AkutsuPublished in: Bioinform. (2010)
Keyphrases
- integer programming
- rna secondary structure prediction
- genome wide
- np hard
- lagrangian relaxation
- linear programming
- constraint programming
- production planning
- network flow
- set covering problem
- ai planning
- column generation
- valid inequalities
- linear programming relaxation
- cutting plane algorithm
- secondary structure
- integer program
- transportation problem
- set covering
- integer programming formulations
- inference problems
- string kernels
- cutting plane
- vehicle routing problem with time windows
- dantzig wolfe decomposition
- linear program