DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
Kengo SatoYuki KatoTatsuya AkutsuKiyoshi AsaiYasubumi SakakibaraPublished in: Bioinform. (2012)
Keyphrases
- dual decomposition
- rna secondary structure prediction
- rna sequences
- energy minimization
- secondary structure
- map inference
- markov random field
- rna secondary structures
- free energy
- dna sequences
- lagrangian relaxation
- markov logic
- protein folding
- protein sequences
- max margin
- graphical models
- belief propagation
- energy function
- computational methods
- structured prediction
- least squares