Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression.

Yuansheng Liu Zu-Guo Yu Marcel E. Dinger Jinyan Li

Published in: Bioinform. (2019)

Keyphrases

data structure
suffix tree
cost function
image compression
data compression
compression scheme
database
automatically generating
sufficient conditions
wavelet tree
compression ratio
edit distance
simulated annealing
global minimum
indexing method
structural similarity
objective function
neural network