Junfeng Xia

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 47

Top Topics

Candidate Genes

Colorectal Cancer

Top Venues

Briefings Bioinform.

Publications

Zhen Gao, Yansen Su, Junfeng Xia, Rui-Fen Cao, Yun Ding, Chun-Hou Zheng, Pi-Jing Wei
DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. Briefings Bioinform. 25 (3) (2024)
Senhua Zhang, Jianting Zhou, Junfeng Xia, Hong Zhang, Zhenfeng He, Kemeng Hu, Leng Liao
Evaluation of Time-Varying Stress in Prestressed Tendons Based on the Resonance-Enhanced Magnetoelastic Method. IEEE Trans. Instrum. Meas. 73 (2024)
Youzhi Qu, Junfeng Xia, Xinyao Jian, Wendu Li, Kaining Peng, Zhichao Liang, Haiyan Wu, Quanying Liu
Uncovering cognitive taskonomy through transfer learning in masked autoencoder-based fMRI reconstruction. CoRR (2024)
Na Cheng, Chuanmei Bi, Yong Shi, Mengya Liu, Anqi Cao, Mengkun Ren, Junfeng Xia, Zhen Liang
Effect Predictor of Driver Synonymous Mutations Based on Multi-Feature Fusion and Iterative Feature Representation Learning. IEEE J. Biomed. Health Informatics 28 (2) (2024)
Zhen Gao, Jin Tang, Junfeng Xia, Chun-Hou Zheng, Pi-Jing Wei
CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Huadong Wang, Jianhui Sun, Mengya Liu, Chun-Hou Zheng, Junfeng Xia, Na Cheng
frDSM: An Ensemble Predictor With Effective Feature Representation for Deleterious Synonymous Mutation in Human Genome. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Lihua Wang, Tao Zhang, Lihong Yu, Chun-Hou Zheng, Wenguang Yin, Junfeng Xia, Tiejun Zhang
Deleterious synonymous mutation identification based on selective ensemble strategy. Briefings Bioinform. 24 (1) (2023)
Jing Wang, Junfeng Xia, Haiyun Wang, Yansen Su, Chun-Hou Zheng
scDCCA: deep contrastive clustering for single-cell RNA-seq data based on auto-encoder network. Briefings Bioinform. 24 (1) (2023)
Jiawei Wu, Qingrui Liu, Min Li, Jiliang Xu, Chen Wang, Junyin Zhang, Minfeng Xiao, Yannan Bin, Junfeng Xia
PhaGAA: an integrated web server platform for phage genome annotation and analysis. Bioinform. 39 (3) (2023)
Na Cheng, Huadong Wang, Xi Tang, Tao Zhang, Jie Gui, Chun-Hou Zheng, Junfeng Xia
An Ensemble Framework for Improving the Prediction of Deleterious Synonymous Mutation. IEEE Trans. Circuits Syst. Video Technol. 32 (5) (2022)
Jing Wang, Junfeng Xia, Dayu Tan, Rongxin Lin, Yansen Su, Chun-Hou Zheng
scHFC: a hybrid fuzzy clustering method for single-cell RNA-seq data optimized by natural computation. Briefings Bioinform. 23 (2) (2022)
Wending Tang, Ruyu Dai, Wenhui Yan, Wei Zhang, Yannan Bin, En-Hua Xia, Junfeng Xia
Identifying multi-functional bioactive peptide functions using multi-label deep learning. Briefings Bioinform. 23 (1) (2022)
Wenhui Yan, Wending Tang, Lihua Wang, Yannan Bin, Junfeng Xia
PrMFTP: Multi-functional therapeutic peptides prediction based on multi-head self-attention mechanism and class weight optimization. PLoS Comput. Biol. 18 (9) (2022)
Chao Dong, Jie Liu, Wenhui Yan, Mengmeng Han, Lijun Wu, Junfeng Xia, Yannan Bin
An Ensemble Framework Integrating Whole Slide Pathological Images and miRNA Data to Predict Radiosensitivity of Breast Cancer Patients. ICIC (2) (2022)
Xiaoyan Li, Shunshuai Ma, Wenhui Yan, Yong Wu, Hui Kong, Mingshan Zhang, Xiongjian Luo, Junfeng Xia
dbBIP: a comprehensive bipolar disorder database for genetic research. Database J. Biol. Databases Curation 2022 (2022) (2022)
Chen Wang, Junyin Zhang, Li Cheng, Jiawei Wu, Minfeng Xiao, Junfeng Xia, Yannan Bin
DPProm: A Two-Layer Predictor for Identifying Promoters and Their Types on Phage Genome Using Deep Learning. IEEE J. Biomed. Health Informatics 26 (10) (2022)
Sijia Zhang, Lihua Wang, Le Zhao, Menglu Li, Mengya Liu, Ke Li, Yannan Bin, Junfeng Xia
An improved DNA-binding hot spot residues prediction method by exploring interfacial neighbor properties. BMC Bioinform. (3) (2021)
Xi Tang, Tao Zhang, Na Cheng, Huadong Wang, Chun-Hou Zheng, Junfeng Xia, Tiejun Zhang
Erratum: usDSM: a novel method for deleterious synonymous mutation prediction using undersampling scheme. Briefings Bioinform. 22 (6) (2021)
Xi Tang, Tao Zhang, Na Cheng, Huadong Wang, Chun-Hou Zheng, Junfeng Xia, Tiejun Zhang
usDSM: a novel method for deleterious synonymous mutation prediction using undersampling scheme. Briefings Bioinform. 22 (5) (2021)
Ruyu Dai, Wei Zhang, Wending Tang, Evelien Wynendaele, Qizhi Zhu, Yannan Bin, Bart De Spiegeleer, Junfeng Xia
BBPpred: Sequence-Based Prediction of Blood-Brain Barrier Peptides with Feature Representation Learning and Logistic Regression. J. Chem. Inf. Model. 61 (1) (2021)
Zhenyu Yue, Xinlu Chu, Junfeng Xia
PredCID: prediction of driver frameshift indels in human cancer. Briefings Bioinform. 22 (3) (2021)
Menglu Li, Yanan Wang, Fuyi Li, Yun Zhao, Mengya Liu, Sijia Zhang, Yannan Bin, Alexander Ian Smith, Geoffrey I. Webb, Jian Li, Jiangning Song, Junfeng Xia
A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Yun-Yun Tang, Pi-Jing Wei, Jianping Zhao, Junfeng Xia, Rui-Fen Cao, Chun-Hou Zheng
Identification of driver genes based on gene mutational effects and network centrality. BMC Bioinform. (3) (2021)
Sijia Zhang, Le Zhao, Chun-Hou Zheng, Junfeng Xia
A feature-based approach to predict hot spots in protein-DNA binding interfaces. Briefings Bioinform. 21 (3) (2020)
Zhenyu Yue, Le Zhao, Junfeng Xia
dbCPM: a manually curated database for exploring the cancer passenger mutations. Briefings Bioinform. 21 (1) (2020)
Ke Li, Sijia Zhang, Di Yan, Yannan Bin, Junfeng Xia
Prediction of hot spots in protein-DNA binding interfaces based on supervised isometric feature mapping and extreme gradient boosting. BMC Bioinform. (13) (2020)
Na Cheng, Menglu Li, Le Zhao, Bo Zhang, Yuhua Yang, Chun-Hou Zheng, Junfeng Xia
Comparison and integration of computational methods for deleterious synonymous mutation prediction. Briefings Bioinform. 21 (3) (2020)
Xi Tang, Menglu Li, Wei Zhang, Junfeng Xia
Predicting lncRNA-disease Association based on Extreme Gradient Boosting. ICBBB (2020)
Le Zhao, Sijia Zhang, Junfeng Xia
Sequence-Based Prediction of Hot Spots in Protein-RNA Complexes Using an Ensemble Approach. ICIC (1) (2019)
Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. (4) (2019)
Sijia Zhang, Le Zhao, Junfeng Xia
SPHot: Prediction of Hot Spots in Protein-RNA Complexes by Protein Sequence Information and Ensemble Classifier. IEEE Access 7 (2019)
Zhenyu Yue, Le Zhao, Na Cheng, Hua Yan, Junfeng Xia
dbCID: a manually curated resource for exploring the driver indels in human cancer. Briefings Bioinform. 20 (5) (2019)
Yannan Bin, Qizhi Zhu, Menglu Li, Junfeng Xia
Comprehensive Analysis of Alzheimer's Disease Biologically Candidate Causal Genes Revealed by Function Association Study With GWAS. IEEE Access 7 (2019)
Yannan Bin, Ling Shu, Qizhi Zhu, Huanhuan Zhu, Junfeng Xia
Further Evidence for Role of Promoter Polymorphisms in TNF Gene in Alzheimer's Disease. ICIC (2) (2018)
Yannan Bin, Xiaojuan Wang, Qizhi Zhu, Pengbo Wen, Junfeng Xia
Nucleotide-Based Significance of Somatic Synonymous Mutations for Pan-Cancer. ICIC (2) (2018)
Haiyang Sun, Zhenyu Yue, Le Zhao, Junfeng Xia, Yannan Bin, Di Zhang
Computational Prediction of Driver Missense Mutations in Melanoma. ICIC (2) (2018)
Pengbo Wen, Junfeng Xia, Xianbin Cao, Bin Chen, Yinping Tao, Lijun Wu, An Xu, Guoping Zhao
dbCRSR: a manually curated database for regulation of cancer radiosensitivity. Database J. Biol. Databases Curation 2018 (2018)
Shu-Guang Ge, Junfeng Xia, Wen Sha, Chun-Hou Zheng
Cancer Subtype Discovery Based on Integrative Model of Multigenomic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Pi-Jing Wei, Di Zhang, Haitao Li, Junfeng Xia, Chun-Hou Zheng
DriverFinder: A Gene Length-Based Network Method to Identify Cancer Driver Genes. Complex. 2017 (2017)
Xiaojuan Wang, Hua Yan, Di Zhang, Le Zhao, Yannan Bin, Junfeng Xia
Investigating Alzheimer's Disease Candidate Genes Based on Combined Network Using Subnetwork Extraction Algorithms. ICIC (2) (2017)
Junliang Shang, Yingxia Sun, Jin-Xing Liu, Junfeng Xia, Junying Zhang, Chun-Hou Zheng
-order epistatic interactions. BMC Bioinform. 17 (2016)
Pi-Jing Wei, Di Zhang, Chun-Hou Zheng, Junfeng Xia
Cancer genes discovery based on integtating transcriptomic data and the impact of gene length. BIBM (2016)
Chun-Hou Zheng, Wu Yang, Yanwen Chong, Junfeng Xia
Identification of mutated driver pathways in cancer using a multi-objective optimization model. Comput. Biol. Medicine 72 (2016)
Pi-Jing Wei, Di Zhang, Junfeng Xia, Chun-Hou Zheng
LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network. BMC Bioinform. 17 (S-17) (2016)
Pengbo Wen, Peng Xiao, Junfeng Xia
dbDSM: a manually curated database for deleterious synonymous mutations. Bioinform. 32 (12) (2016)
Peng Chen, ShanShan Hu, Jun Zhang, Xin Gao, Jinyan Li, Junfeng Xia, Bing Wang
A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (5) (2016)
Shu-Guang Ge, Junfeng Xia, Pi-Jing Wei, Chun-Hou Zheng
Srrr-cluster: Using Sparse Reduced-Rank Regression to Optimize iCluster. ICIC (3) (2016)
Ran Wei, Haitao Li, Yanjun Wang, Chun-Hou Zheng, Junfeng Xia
Identification of Colorectal Cancer Candidate Genes Based on Subnetwork Extraction Algorithm. ICIC (3) (2015)
Di Zhang, Qingbao Wang, Rongrong Zhu, Haitao Li, Chun-Hou Zheng, Junfeng Xia
Discovery of Ovarian Cancer Candidate Genes Using Protein Interaction Information. ICIC (2) (2015)
Zhenyu Yue, Yan Chen, Junfeng Xia
Prediction of Clinical Drug Response Based on Differential Gene Expression Levels. ICIC (2) (2015)
Di Zhang, Rongrong Zhu, Hanqian Zhang, Chun-Hou Zheng, Junfeng Xia
MGDB: a comprehensive database of genes involved in melanoma. Database J. Biol. Databases Curation 2015 (2015)
Wu Yang, Junfeng Xia, Yan Zhang, Chun-Hou Zheng
Multi-objective Optimization Method for Identifying Mutated Driver Pathways in Cancer. ICIC (2) (2015)
Chengjun Xie, Jie Zhang, Rui Li, Jinyan Li, Peilin Hong, Junfeng Xia, Peng Chen
Automatic classification for field crop insects via multiple-task sparse representation and multiple-kernel learning. Comput. Electron. Agric. 119 (2015)
Di Zhang, Junfeng Xia
Potential Driver Genes Regulated by OncomiRNA Are Associated with Druggability in Pan-Negative Melanoma. ICIC (3) (2014)
Fen Ye, Junfeng Xia, Yanwen Chong, Yan Zhang, Chun-Hou Zheng
Tumor Clustering Using Independent Component Analysis and Adaptive Affinity Propagation. ICIC (3) (2014)
Yun-Qiang Di, Changchang Wang, Huan Wu, Xinxin Yu, Junfeng Xia
Comparative Assessment of Data Sets of Protein Interaction Hot Spots Used in the Computational Method. ICIC (3) (2014)
Lin Yuan, Wen Sha, Jun Zhang, Chun-Hou Zheng, Junfeng Xia
Differential coexpression analysis in gene modules level and its application to type 2 diabetes. BIBM (2013)
Morgan Harrell, Junfeng Xia, Zhongming Zhao
Network analysis of gene fusions in human cancer. BMC Bioinform. 14 (S-17) (2013)
Zhu-Hong You, Ying-Ke Lei, Lin Zhu, Junfeng Xia, Bing Wang
Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis. BMC Bioinform. 14 (S-8) (2013)
Qingguo Wang, Junfeng Xia, Peilin Jia, William Pao, Zhongming Zhao
Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives. Briefings Bioinform. 14 (4) (2013)
Huan Wu, Yun-Qiang Di, Chun-Hou Zheng, Junfeng Xia
Prediction of cytochrome P450 inhibition using ensemble of extreme learning machine. BIBM (2013)
Zhongming Zhao, Junfeng Xia, Oznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
Virus interactions with human signal transduction pathways. Int. J. Comput. Biol. Drug Des. 4 (1) (2011)
Zhixi Su, Junfeng Xia, Zhongming Zhao
Do MicroRNAs Preferentially Target the Genes with Low DNA Methylation Level at the Promoter Region? ICIC (3) (2011)
Junfeng Xia, Jingchun Sun, Peilin Jia, Zhongming Zhao
Do cancer proteins really interact strongly in the human protein-protein interaction network? Comput. Biol. Chem. 35 (3) (2011)
Junfeng Xia, Xing-Ming Zhao, Jiangning Song, De-Shuang Huang
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility. BMC Bioinform. 11 (2010)
Shulin Wang, Xueling Li, Junfeng Xia, Xiao-Ping Zhang
Weighted Neighborhood Classifier for the Classification of Imbalanced Tumor Dataset. J. Circuits Syst. Comput. 19 (1) (2010)
Ying-Ke Lei, Junfeng Xia
A New Source and Receiver Localization Method with Erroneous Receiver Positions. ICIC (2) (2009)
Junfeng Xia, Bing Wang, De-Shuang Huang
Inferring Strengths of Protein-Protein Interaction Using Artificial Neural Network. IJCNN (2007)