Oznur Tastan

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 17

Top Topics

High Throughput

Computational Methods

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

Publications

Onur Can Uner, Halil Ibrahim Kuru, Ramazan Gokberk Cinbis, Oznur Tastan, A. Ercüment Çiçek
DeepSide: A Deep Learning Approach for Drug Side Effect Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Serhan Yilmaz, Mohamad Fakhouri, Mehmet Koyutürk, A. Ercüment Çiçek, Oznur Tastan
Uncovering complementary sets of variants for predicting quantitative phenotypes. Bioinform. 38 (4) (2022)
Gulden Olgun, Oznur Tastan
miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Halil Ibrahim Kuru, Oznur Tastan, A. Ercüment Çiçek
MatchMaker: A Deep Learning Framework for Drug Synergy Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Yasin Ilkagan Tepeli, Ali Burak Ünal, Furkan Mustafa Akdemir, Oznur Tastan
PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering. Bioinform. 36 (21) (2021)
Gulden Olgun, Afshan Nabi, Oznur Tastan
NoRCE: non-coding RNA sets cis enrichment tool. BMC Bioinform. 22 (1) (2021)
Gizem Caylak, Oznur Tastan, A. Ercüment Çiçek
A Tool for Detecting Complementary Single Nucleotide Polymorphism Pairs in Genome-Wide Association Studies for Epistasis Testing. J. Comput. Biol. 28 (4) (2021)
Serhan Yilmaz, Oznur Tastan, A. Ercüment Çiçek
SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (3) (2021)
Halil Ibrahim Kuru, Mustafa Buyukozkan, Oznur Tastan
PRER: A patient representation with pairwise relative expression of proteins on biological networks. PLoS Comput. Biol. 17 (5) (2021)
Gulden Olgun, Afshan Nabi, Oznur Tastan
Correction to: NoRCE: non‑coding RNA sets cis enrichment tool. BMC Bioinform. 22 (1) (2021)
Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu, Oznur Tastan, Erman Ayday
Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding. CoRR (2021)
Gizem Caylak, Oznur Tastan, A. Ercüment Çiçek
Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection. J. Comput. Biol. 28 (4) (2021)
Gulden Olgun, Oznur Tastan
Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors. BCB (2020)
Iman Deznabi, Busra Arabaci, Mehmet Koyutürk, Oznur Tastan
DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases. Bioinform. 36 (12) (2020)
Gulce Kale, Erman Ayday, Oznur Tastan
A utility maximizing and privacy preserving approach for protecting kinship in genomic databases. Bioinform. 34 (2) (2018)
Iman Deznabi, Mohammad Mobayen, Nazanin Jafari, Oznur Tastan, Erman Ayday
An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Burçak Otlu, Can Firtina, Sündüz Keles, Oznur Tastan
GLANET: genomic loci annotation and enrichment tool. Bioinform. 33 (18) (2017)
Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
Refining Literature Curated Protein Interactions Using Expert Opinions. Pacific Symposium on Biocomputing (2015)
Zhongming Zhao, Junfeng Xia, Oznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
Virus interactions with human signal transduction pathways. Int. J. Comput. Biol. Drug Des. 4 (1) (2011)
Subhodeep Moitra, Naveena Yanamala, Oznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE (2010)
Yanjun Qi, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinform. 26 (18) (2010)
Irtisha Singh, Oznur Tastan, Judith Klein-Seetharaman
Comparison of virus interactions with human signal transduction pathways. BCB (2010)
Sivaraman Balakrishnan, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. GENSiPS (2009)
Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration. Pacific Symposium on Biocomputing (2009)