Christopher James Langmead

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 5

Top Topics

Relational Dependency Networks

Graphical Models

Computational Models

Protein Protein Interactions

Top Venues

Int. J. Bioinform. Res. Appl.

J. Comput. Biol.

Publications

Charles London, Douglas Brown, Wenduan Xu, Sezen Vatansever, Christopher James Langmead, Dimitri Kartsaklis, Stephen Clark, Konstantinos Meichanetzidis
Peptide Binding Classification on Quantum Computers. CoRR (2023)
Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon
Deep Normed Embeddings for Patient Representation. CoRR (2022)
Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon
Unifying Cardiovascular Modelling with Deep Reinforcement Learning for Uncertainty Aware Control of Sepsis Treatment. CoRR (2021)
Trevor S. Frisby, Christopher James Langmead
Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution. Algorithms Mol. Biol. 16 (1) (2021)
Trevor S. Frisby, Zhiyun Gong, Christopher James Langmead
Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories. Bioinform. 37 (Supplement) (2021)
Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. J. Comput. Biol. 22 (6) (2015)
Arup Kumar Ghosh, Faraz Hussain, Susmit Jha, Christopher James Langmead, Sumit Kumar Jha
Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model. Int. J. Bioinform. Res. Appl. 10 (4/5) (2014)
Faraz Hussain, Sumit Kumar Jha, Susmit Jha, Christopher James Langmead
Parameter discovery in stochastic biological models using simulated annealing and statistical model checking. Int. J. Bioinform. Res. Appl. 10 (4/5) (2014)
Faraz Hussain, Christopher James Langmead, Qi Mi, Joyeeta Dutta-Moscato, Yoram Vodovotz, Sumit Kumar Jha
Parameter discovery for stochastic computational models in systems biology using Bayesian model checking. ICCABS (2014)
Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. RECOMB (2014)
Sumit Kumar Jha, Christopher James Langmead
Exploring behaviors of stochastic differential equation models of biological systems using change of measures. BMC Bioinform. 13 (S-5) (2012)
Arup K. Ghosh, Faraz Hussain, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha
Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems. ICCABS (2012)
Sumit Kumar Jha, Raj Gautam Dutta, Christopher James Langmead, Susmit Jha, Emily Sassano
Synthesis of insulin pump controllers from safety specifications using Bayesian model validation. Int. J. Bioinform. Res. Appl. 8 (3/4) (2012)
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Learning generative models of molecular dynamics. BMC Genom. 13 (S-1) (2012)
Faraz Hussain, Raj Gautam Dutta, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha
Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing. ICCABS (2012)
Sumit Kumar Jha, Christopher James Langmead
Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement. Theor. Comput. Sci. 412 (21) (2011)
Sumit Kumar Jha, Christopher James Langmead
Poster: Synthesis of biochemical models. ICCABS (2011)
Sumit Kumar Jha, Christopher James Langmead, Swarup Mohalik, S. Ramesh
When to stop verification?: Statistical trade-off between expected loss and simulation cost. DATE (2011)
Sumit Kumar Jha, Christopher James Langmead
Exploring behaviors of SDE models of biological systems using change of measures. ICCABS (2011)
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
Approximating Correlated Equilibria using Relaxations on the Marginal Polytope. ICML (2011)
Subhodeep Moitra, Naveena Yanamala, Oznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE (2010)
Alexandre Donzé, Gilles Clermont, Christopher James Langmead
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. J. Comput. Biol. 17 (3) (2010)
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher James Langmead
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. J. Comput. Biol. 17 (3) (2010)
Christopher James Langmead, Sumit Kumar Jha
Symbolic Approaches for Finding Control Strategies in Boolean Networks. J. Bioinform. Comput. Biol. 7 (2) (2009)
Sumit Kumar Jha, Edmund M. Clarke, Christopher James Langmead, Axel Legay, André Platzer, Paolo Zuliani
A Bayesian Approach to Model Checking Biological Systems. CMSB (2009)
Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. RECOMB (2009)
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher James Langmead
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. RECOMB (2009)
Hetunandan Kamisetty, Christopher James Langmead
A Bayesian approach to protein model quality assessment. ICML (2009)
Christopher James Langmead, Sumit Kumar Jha
Symbolic Approaches for Finding Control Strategies in Boolean Networks. APBC (2008)
Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. CMSB (2008)
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. J. Comput. Biol. 15 (7) (2008)
Christopher James Langmead, Sumit Kumar Jha
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. WABI (2007)
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. RECOMB (2007)
Christopher James Langmead
A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. APBC (2006)
K. Arun, Christopher James Langmead
Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. APBC (2006)
Anthony K. Yan, Christopher James Langmead, Bruce Randall Donald
A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology. Int. J. Robotics Res. 24 (2-3) (2005)
K. Arun, Christopher James Langmead
Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. CSB (2004)
Christopher James Langmead, Bruce Randall Donald
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. CSB (2004)
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. J. Comput. Biol. 11 (2/3) (2004)
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB (2003)
Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. J. Comput. Biol. 10 (3/4) (2003)
Christopher James Langmead, Bruce Randall Donald
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. CSB (2003)
Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald
Phase-independent rhythmic analysis of genome-wide expression patterns. RECOMB (2002)
Christopher James Langmead, C. Robertson McClung, Bruce Randall Donald
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns. CSB (2002)
Christopher James Langmead, Bruce Randall Donald
Extracting structural information using time-frequency analysis of protein NMR data. RECOMB (2001)
Christopher James Langmead
Sound Analysis, Comparison and Modification Based on Perceptual Model of Timbre. ICMC (1995)