Leonard A. Harris

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 7

Top Topics

Automated Image Analysis

Signal Transduction Pathways

Systems Biology

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez
Unified tumor growth mechanisms from multimodel inference and dataset integration. PLoS Comput. Biol. 19 (7) (2023)
Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez
Unsupervised logic-based mechanism inference for network-driven biological processes. PLoS Comput. Biol. 17 (6) (2021)
Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez
Thunor: visualization and analysis of high-throughput dose-response datasets. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J. Integr. Bioinform. 17 (2-3) (2020)
Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS Comput. Biol. 13 (2) (2017)
Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez
GPU-powered model analysis with PySB/cupSODA. Bioinform. 33 (21) (2017)
Leonard A. Harris, Justin S. Hogg, José Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder
BioNetGen 2.2: advances in rule-based modeling. Bioinform. 32 (21) (2016)
John E. Wenskovitch, Leonard A. Harris, José Juan Tapia, James R. Faeder, G. Elisabeta Marai
MOSBIE: a tool for comparison and analysis of rule-based biochemical models. BMC Bioinform. 15 (2014)
Justin S. Hogg, Leonard A. Harris, Lori J. Stover, Niketh S. Nair, James R. Faeder
Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems. PLoS Comput. Biol. 10 (4) (2014)
Leonard A. Harris, Justin S. Hogg, James R. Faeder
Compartmental Rule-based Modeling of Biochemical Systems. WSC (2009)
Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. CMSB (2008)