Carlos F. Lopez

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 12

Top Topics

Metadata Management

Independence Assumption

Systems Biology

Top Venues

PLoS Comput. Biol.

J. Comput. Phys.

Publications

Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez
Unified tumor growth mechanisms from multimodel inference and dataset integration. PLoS Comput. Biol. 19 (7) (2023)
Michael W. Irvin, Arvind Ramanathan, Carlos F. Lopez
Model certainty in cellular network-driven processes with missing data. PLoS Comput. Biol. 19 (4) (2023)
Martina Prugger, Lukas Einkemmer, Carlos F. Lopez
A dynamical low-rank approach to solve the chemical master equation for biological reaction networks. J. Comput. Phys. 489 (2023)
Alexander L. R. Lubbock, Carlos F. Lopez
automated metadata management for systems biology benchmarking and reproducibility in Python. Bioinform. 38 (20) (2022)
Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez
Unsupervised logic-based mechanism inference for network-driven biological processes. PLoS Comput. Biol. 17 (6) (2021)
Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez
Thunor: visualization and analysis of high-throughput dose-response datasets. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. PLoS Comput. Biol. 15 (10) (2019)
Erin M. Shockley, Jasper A. Vrugt, Carlos F. Lopez
PyDREAM: high-dimensional parameter inference for biological models in python. Bioinform. 34 (4) (2018)
Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS Comput. Biol. 13 (2) (2017)
Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez
GPU-powered model analysis with PySB/cupSODA. Bioinform. 33 (21) (2017)
Javier Lorca, Carlos F. Lopez
Early prediction of packet errors in FEC-encoded systems with very few decoding iterations. WMNC (2017)
Javier Lorca, Carlos F. Lopez
Frequency-dependent modulation and coding rates for LTE link adaptation in static conditions. PIMRC (2016)