Réka Albert

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 20

Top Topics

Dynamical Behavior

Gene Regulatory

Biologically Inspired

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors. PLoS Comput. Biol. 19 (8) (2023)
Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert
pystablemotifs: Python library for attractor identification and control in Boolean networks. Bioinform. 38 (5) (2022)
Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea
Whole community invasions and the integration of novel ecosystems. PLoS Comput. Biol. 18 (6) (2022)
David J. Wooten, Réka Albert
synergy: a Python library for calculating, analyzing and visualizing drug combination synergy. Bioinform. 37 (10) (2021)
David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert
Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies. PLoS Comput. Biol. 17 (3) (2021)
Parul Maheshwari, Réka Albert
Network model and analysis of the spread of Covid-19 with social distancing. Appl. Netw. Sci. 5 (1) (2020)
Gang Yan, Alex Arenas, Réka Albert
Introduction to the Special Section on Network Science in Biological and Bio-Inspired Systems. IEEE Trans. Netw. Sci. Eng. 7 (1) (2020)
Jordan C. Rozum, Réka Albert
Controlling the cell Cycle restriction Switch across the Information Gradient. Adv. Complex Syst. 22 (7&8) (2019)
Farzane Yahyanejad, Réka Albert, Bhaskar DasGupta
A survey of some tensor analysis techniques for biological systems. Quant. Biol. 7 (4) (2019)
Parul Maheshwari, Hao Du, Jen Sheen, Sarah M. Assmann, Réka Albert
Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling. PLoS Comput. Biol. 15 (10) (2019)
David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. PLoS Comput. Biol. 15 (10) (2019)
Réka Albert, John Baillieul, Adilson E. Motter
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. CoRR (2018)
Réka Albert, John Baillieul, Adilson E. Motter
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. IEEE Trans. Control. Netw. Syst. 5 (2) (2018)
Jordan C. Rozum, Réka Albert
Identifying (un)controllable dynamical behavior in complex networks. PLoS Comput. Biol. 14 (12) (2018)
Zhongyao Sun, Réka Albert
Node-independent elementary signaling modes: A measure of redundancy in Boolean signaling transduction networks. Netw. Sci. 4 (3) (2016)
Jorge G. T. Zañudo, Gang Yang, Réka Albert
Structure-based control of complex networks with nonlinear dynamics. CoRR (2016)
Colin Campbell, Katriona Shea, Suann Yang, Réka Albert
Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities. J. Complex Networks 4 (1) (2016)
Xiao Gan, Réka Albert
Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation. BMC Syst. Biol. 10 (2016)
Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran Jr., Jason A. Papin, Réka Albert
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. PLoS Comput. Biol. 11 (6) (2015)
Jorge G. T. Zañudo, Réka Albert
Cell Fate Reprogramming by Control of Intracellular Network Dynamics. PLoS Comput. Biol. 11 (4) (2015)
Colin Campbell, Réka Albert
Stabilization of perturbed Boolean network attractors through compensatory interactions. BMC Syst. Biol. 8 (2014)
Réka Albert, Bhaskar DasGupta, Nasim Mobasheri
Topological implications of negative curvature for biological and social networks. CoRR (2014)
Zhongyao Sun, Xiaofen Jin, Réka Albert, Sarah M. Assmann
Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought. PLoS Comput. Biol. 10 (11) (2014)
Assieh Saadatpour, Réka Albert, Timothy C. Reluga
A Reduction Method for Boolean Network Models Proven to Conserve Attractors. SIAM J. Appl. Dyn. Syst. 12 (4) (2013)
Réka Albert, Bhaskar DasGupta, Nasim Mobasheri
Some Perspectives on Network Modeling in Therapeutic Target Prediction. CoRR (2013)
Supreet Reddy Mandala, Soundar R. T. Kumara, Calyampudi Radhakrishna Rao, Réka Albert
Clustering social networks using ant colony optimization. Oper. Res. 13 (1) (2013)
Rui-Sheng Wang, Zhongyao Sun, Réka Albert
Minimal functional routes in directed graphs with dependent edges. Int. Trans. Oper. Res. 20 (3) (2013)
Juilee Thakar, Ashutosh K. Pathak, Lisa Murphy, Réka Albert, Isabella M. Cattadori
Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth. PLoS Comput. Biol. 8 (1) (2012)
Adilson E. Motter, Réka Albert
Networks in Motion CoRR (2012)
Rui-Sheng Wang, Réka Albert
Elementary signaling modes predict the essentiality of signal transduction network components. BMC Syst. Biol. 5 (2011)
Assieh Saadatpour, Rui-Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert
Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia. PLoS Comput. Biol. 7 (11) (2011)
Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag
A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks CoRR (2011)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs. Algorithmica 51 (2) (2008)
István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert
Boolean network simulations for life scientists. Source Code Biol. Medicine 3 (2008)
Sema Kachalo, Ranran Zhang, Eduardo D. Sontag, Réka Albert, Bhaskar DasGupta
NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks. Bioinform. 24 (2) (2008)
Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T. Harvill, Réka Albert
Modeling Systems-Level Regulation of Host Immune Responses. PLoS Comput. Biol. 3 (6) (2007)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. J. Comput. Biol. 14 (7) (2007)
Claire Christensen, Réka Albert
Using Graph Concepts to Understand the Organization of Complex Systems. Int. J. Bifurc. Chaos 17 (7) (2007)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. WABI (2007)
Madalena Chaves, Eduardo D. Sontag, Réka Albert
Structure and timescale analysis in genetic regulatory networks. CDC (2006)
Wen-Yu Chung, Réka Albert, István Albert, Anton Nekrutenko, Kateryna D. Makova
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. BMC Bioinform. 7 (2006)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs Electron. Colloquium Comput. Complex. (010) (2006)
Anshuman Gupta, Costas D. Maranas, Réka Albert
Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites. Bioinform. 22 (2) (2006)
Hari Prasad Thadakamalla, Usha Nandini Raghavan, Soundar R. T. Kumara, Réka Albert
Survivability of Multiagent-Based Supply Networks: A Topological Perspective. IEEE Intell. Syst. 19 (5) (2004)
István Albert, Réka Albert
Conserved network motifs allow protein-protein interaction prediction. Bioinform. 20 (18) (2004)
Réka Albert, Albert-László Barabási
Statistical mechanics of complex networks CoRR (2001)
Réka Albert, Hawoong Jeong, Albert-László Barabási
The diameter of the world wide web CoRR (1999)