Suzanne S. Sindi

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 6

Top Topics

Saccharomyces Cerevisiae

Regulatory Networks

Top Venues

Appl. Math. Lett.

PLoS Comput. Biol.

J. Appl. Probab.

Publications

Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors. PLoS Comput. Biol. 19 (8) (2023)
A. Ali Heydari, Oscar A. Davalos, Katrina K. Hoyer, Suzanne S. Sindi
N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification. CoRR (2022)
A. Ali Heydari, Oscar A. Davalos, Lihong Zhao, Katrina K. Hoyer, Suzanne S. Sindi
: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders. Bioinform. 38 (8) (2022)
A. Ali Heydari, Suzanne S. Sindi, Maxime Theillard
Conservative finite volume method on deforming geometries: The case of protein aggregation in dividing yeast cells. J. Comput. Phys. 448 (2022)
Paul Lemarre, Laurent Pujo-Menjouet, Suzanne S. Sindi
A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion. PLoS Comput. Biol. 16 (5) (2020)
H. T. Banks, Kevin B. Flores, Suzanne S. Sindi
On analytical and numerical approaches to division and label structured population models. Appl. Math. Lett. 60 (2016)
Jason K. Davis, Suzanne S. Sindi
A study in nucleated polymerization models of protein aggregation. Appl. Math. Lett. 40 (2015)
Peter Olofsson, Suzanne S. Sindi
A Crump-Mode-Jagers Branching Process Model of Prion Loss in Yeast. J. Appl. Probab. 51 (2) (2014)
Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael
Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. 30 (24) (2014)
Alejandro Cáceres, Suzanne S. Sindi, Benjamin J. Raphael, Mario Cáceres, Juan R. González
Identification of polymorphic inversions from genotypes. BMC Bioinform. 13 (2012)
Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir
Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS (2011)
Suzanne S. Sindi, Benjamin J. Raphael
Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data. J. Comput. Biol. 17 (3) (2010)
Suzanne S. Sindi, Benjamin J. Raphael
Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data. RECOMB (2009)
Suzanne S. Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael
A geometric approach for classification and comparison of structural variants. Bioinform. 25 (12) (2009)
Suzanne S. Sindi
Handbook of Computational Molecular Biology: Edited by Srinivas Aluru. Briefings Bioinform. 8 (3) (2007)