Ali Bashir

ORCID

Publication Activity (10 Years)

Years Active: 2007-2022
Publications (10 Years): 3

Top Venues

Bioinform.

BMC Bioinform.

CoRR

University of California, San Diego, USA (PHD)

Education History

University of California, San Diego, USA

PHD

Publications

Zahra Shamsi, Drew Bryant, Jacob Wilson, Xiaoyu Qu, Avinava Dubey, Konik Kothari, Mostafa Dehghani, Mariya Chavarha, Valerii Likhosherstov, Brian Williams, Michael Frumkin, Fred Appelbaum, Krzysztof Choromanski, Ali Bashir, Min Fang
Automated Deep Aberration Detection from Chromosome Karyotype Images. CoRR (2022)
Oscar L. Rodriguez, Anna M. Ritz, Andrew J. Sharp, Ali Bashir
MsPAC: a tool for haplotype-phased structural variant detection. Bioinform. 36 (3) (2020)
Volkan Sevim, Ali Bashir, Chen-Shan Chin, Karen H. Miga
Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing. Bioinform. 32 (13) (2016)
Ajay Ummat, Ali Bashir
Resolving complex tandem repeats with long reads. Bioinform. 30 (24) (2014)
Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael
Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. 30 (24) (2014)
Noam D. Beckmann, Sashank Karri, Gang Fang, Ali Bashir
Detecting epigenetic motifs in low coverage and metagenomics settings. BMC Bioinform. 15 (S-9) (2014)
Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir
Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS (2011)
Christine Lo, Ali Bashir, Vikas Bansal, Vineet Bafna
Strobe sequence design for haplotype assembly. BMC Bioinform. 12 (S-1) (2011)
Anna M. Ritz, Ali Bashir, Benjamin J. Raphael
Structural variation analysis with strobe reads. Bioinform. 26 (10) (2010)
Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna
Optimizing PCR Assays for DNA-Based Cancer Diagnostics. J. Comput. Biol. 17 (3) (2010)
Suzanne S. Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael
A geometric approach for classification and comparison of structural variants. Bioinform. 25 (12) (2009)
Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna
Optimizing PCR Assays for DNA Based Cancer Diagnostics. RECOMB (2009)
Ali Bashir, Stanislav Volik, Colin C. Collins, Vineet Bafna, Benjamin J. Raphael
Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. PLoS Comput. Biol. 4 (4) (2008)
Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna
Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinform. 23 (21) (2007)

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Publication Activity (10 Years)

Top Topics

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Ali Bashir