Anna M. Ritz

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 32

Top Topics

Kullback Leibler

Dna Copy Number

Top Venues

Publications

Yancheng Liu, Anna M. Ritz
Simplifying Signaling Pathway Reconstruction with Containerized Random Walk Algorithms. SIGCSE (2) (2024)
Ananthan Nambiar, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz
Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. J. Comput. Biol. 30 (1) (2023)
Aysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang
FiT: fiber-based tensor completion for drug repurposing. BCB (2022)
Heyuan Zeng, Jinbiao Zhang, Gabriel A. Preising, Tobias Rubel, Pramesh Singh, Anna M. Ritz
Graphery: interactive tutorials for biological network algorithms. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Elizabeth Leininger, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz
Ten Simple Rules for Attending Your First Conference. CoRR (2021)
Elizabeth Leininger, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz
Ten simple rules for attending your first conference. PLoS Comput. Biol. 17 (7) (2021)
Gabriel A. Preising, Joshua J. Faber-Hammond, Suzy C. P. Renn, Anna M. Ritz
A Protein-Protein Interactome for an African Cichlid. BCB (2020)
Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. BCB (2020)
Tobias Rubel, Anna M. Ritz
Augmenting Signaling Pathway Reconstructions. BCB (2020)
Yuan Zhuang, Kara L. Cerveny, Anna M. Ritz
Prefix/Suffix Variation in Retinoic Acid Response Elements. BCB (2020)
Amy R. Lazarte, Anna M. Ritz
Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience. RESPECT (2020)
Zach Dinardo, Kiran Tomlinson, Anna M. Ritz, Layla Oesper
Distance measures for tumor evolutionary trees. Bioinform. 36 (7) (2020)
Heyuan Zeng, Anna M. Ritz
Graphery: a Biological Network Algorithm Tutorial Webservice. BCB (2020)
Oscar L. Rodriguez, Anna M. Ritz, Andrew J. Sharp, Ali Bashir
MsPAC: a tool for haplotype-phased structural variant detection. Bioinform. 36 (3) (2020)
Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz
Network-based prediction of polygenic disease genes involved in cell motility. BMC Bioinform. (12) (2019)
Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray
Improved Differentially Private Analysis of Variance. CoRR (2019)
Nicholas Franzese, Adam Groce, T. M. Murali, Anna M. Ritz
Hypergraph-based connectivity measures for signaling pathway topologies. PLoS Comput. Biol. 15 (10) (2019)
Alexander King, Ibrahim Youssef, Anna M. Ritz
Factors Affecting Network-Based Gene Prediction Across Diverse Diseases. BIBM (2019)
Ibrahim Youssef, Jeffrey Law, Anna M. Ritz
Integrating protein localization with automated signaling pathway reconstruction. BMC Bioinform. (16) (2019)
Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray
Improved Differentially Private Analysis of Variance. Proc. Priv. Enhancing Technol. 2019 (3) (2019)
Amy R. Lazarte, Samuel B. Fey, Anna M. Ritz
Modeling Phytoplankton Movement and Fitness in Lakes. BCB (2019)
Ibrahim Youssef, Jeffrey Law, Anna M. Ritz
Integrating Protein Localization with Automated Signaling Pathway Reconstruction. BIBM (2018)
Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce
Differentially Private ANOVA Testing. ICDIS (2018)
Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz
Network-Based Prediction of Polygenic Disease Genes Involved in Cell Motility: Extended Abstract. BCB (2018)
Anna M. Ritz
Programming the Central Dogma: An Integrated Unit on Computer Science and Molecular Biology Concepts. SIGCSE (2018)
Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther, Shiv D. Kale, Jean Peccoud, John J. Tyson, T. M. Murali
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinform. 33 (19) (2017)
Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce
Differentially Private ANOVA Testing. CoRR (2017)
Ibrahim Youssef, Anna M. Ritz
Breaking Ties in Weighted Interactomes. BCB (2017)
Anna M. Ritz, Brendan Avent, T. M. Murali
Pathway Analysis with Signaling Hypergraphs. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Barney Potter, James D. Fix, Anna M. Ritz
Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks. BCB (2016)
Karl Menzel, Suzy C. P. Renn, Anna M. Ritz
Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny. BCB (2016)
Nicole Ezell, Anna M. Ritz
Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia. BCB (2016)
Anna M. Ritz, T. M. Murali
Pathway analysis with signaling hypergraphs. BCB (2014)
Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael
Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. 30 (24) (2014)
Craig Estep, Jaeil Yi, Anna M. Ritz, T. M. Murali
GraphSpace: sharing and collaborating through networks on the web. BCB (2014)
Layla Oesper, Anna M. Ritz, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael
Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinform. 13 (S-6) (2012)
Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir
Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS (2011)
Anna M. Ritz, Pamela L. Paris, Michael Ittmann, Colin C. Collins, Benjamin J. Raphael
Detection of recurrent rearrangement breakpoints from copy number data. BMC Bioinform. 12 (2011)
Anna M. Ritz, Ali Bashir, Benjamin J. Raphael
Structural variation analysis with strobe reads. Bioinform. 26 (10) (2010)
Deborah S. Gross, Robert Atlas, Jeffrey Rzeszotarski, Emma Turetsky, Janara M. Christensen, Sami Benzaid, Jamie F. Olson, Thomas Smith, Leah E. Steinberg, Jon Sulman, Anna M. Ritz, Benjamin J. Anderson, Catherine Nelson, David R. Musicant, Lei Chen, David C. Snyder, James J. Schauer
Environmental chemistry through intelligent atmospheric data analysis. Environ. Model. Softw. 25 (6) (2010)
Trevor M. O'Brien, Anna M. Ritz, Benjamin J. Raphael, David H. Laidlaw
Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. IEEE Trans. Vis. Comput. Graph. 16 (6) (2010)
Anna M. Ritz, Gregory Shakhnarovich, Arthur R. Salomon, Benjamin J. Raphael
Discovery of phosphorylation motif mixtures in phosphoproteomics data. Bioinform. 25 (1) (2009)
Benjamin J. Anderson, Deborah S. Gross, David R. Musicant, Anna M. Ritz, Thomas G. Smith, Leah E. Steinberg
Adapting K-Medians to Generate Normalized Cluster Centers. SDM (2006)