Sergei Maslov

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 15

Top Topics

Ordinary Differential Equations

Gene Expression

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Ananthan Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic
Semi-quantitative group testing for efficient and accurate qPCR screening of pathogens with a wide range of loads. BMC Bioinform. 25 (1) (2024)
Anantham Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic
Semi-Quantitative Group Testing for Efficient and Accurate qPCR Screening of Pathogens with a Wide Range of Loads. CoRR (2023)
Tong Wang, Xu-Wen Wang, Kathleen A. Lee-Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun, Sergei Maslov, Yang-Yu Liu
Predicting metabolomic profiles from microbial composition through neural ordinary differential equations. Nat. Mac. Intell. 5 (3) (2023)
Ananthan Nambiar, Veronika Dubinkina, Simon Liu, Sergei Maslov
FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi. PLoS Comput. Biol. 19 (11) (2023)
Ananthan Nambiar, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz
Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. J. Comput. Biol. 30 (1) (2023)
Yulia Fridman, Zihan Wang, Sergei Maslov, Akshit Goyal
Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments. PLoS Comput. Biol. 18 (12) (2022)
Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, Thomas S. Brettin, Cristina Garcia-Cardona, Austin Clyde, Judith D. Cohn, James H. Doroshow, Xiaotian Duan, Veronika Dubinkina, Yvonne A. Evrard, Ya Ju Fan, Jason Gans, Stewart He, Pinyi Lu, Sergei Maslov, Alexander Partin, Maulik Shukla, Eric A. Stahlberg, Justin M. Wozniak, Hyun Seung Yoo, George F. Zaki, Yitan Zhu, Rick Stevens
A cross-study analysis of drug response prediction in cancer cell lines. Briefings Bioinform. 23 (1) (2022)
Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. BCB (2020)
Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier
Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence. PLoS Comput. Biol. 16 (8) (2020)
Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey, Sergei Maslov
Multistability and regime shifts in microbial communities explained by competition for essential nutrients. CoRR (2019)
Tong Wang, Akshit Goyal, Veronika Dubinkina, Sergei Maslov
Evidence for a multi-level trophic organization of the human gut microbiome. PLoS Comput. Biol. 15 (12) (2019)
Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens
Predicting tumor cell line response to drug pairs with deep learning. BMC Bioinform. (18) (2018)
Akshit Goyal, Veronika Dubinkina, Sergei Maslov
Microbial community structure predicted by the stable marriage problem. CoRR (2017)
Daifeng Wang, Fei He, Sergei Maslov, Mark Gerstein
DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks. PLoS Comput. Biol. 12 (10) (2016)
Sergei Maslov, Kim Sneppen
Diversity Waves in Collapse-Driven Population Dynamics. PLoS Comput. Biol. 11 (9) (2015)
Daifeng Wang, Eric Pan, Gang Fang, Sunita Kumari, Fei He, Doreen Ware, Sergei Maslov, Mark Gerstein
Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar. BCB (2013)
Tin Yau Pang, Sergei Maslov
Universal distribution of component frequencies in biological and technological systems. Proc. Natl. Acad. Sci. USA 110 (15) (2013)
Purushottam D. Dixit, Sergei Maslov
Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks. PLoS Comput. Biol. 9 (4) (2013)
Tin Yau Pang, Sergei Maslov
A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology. PLoS Comput. Biol. 7 (5) (2011)
Iaroslav Ispolatov, Sergei Maslov
Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks. BMC Bioinform. 9 (2008)
Sandeep Krishna, Sergei Maslov, Kim Sneppen
SOS Response: A Quantitative Model. PLoS Comput. Biol. 3 (3) (2007)
P. Chen, H. Xie, Sergei Maslov, Sidney Redner
Finding scientific gems with Google's PageRank algorithm. J. Informetrics 1 (1) (2007)
Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova, Sergei Maslov, Sergei Egorov, Alexander Nikitin, Nikolai Daraselia, Ilya Mazo
Automatic pathway building in biological association networks. BMC Bioinform. 7 (2006)
Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov
Ranking Scientific Publications Using a Simple Model of Network Traffic CoRR (2006)