Koon-Kiu Yan

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 3

Top Topics

Comparative Analysis

Multiresolution

Top Venues

PLoS Comput. Biol.

Publications

Cheng Ye, Alberto Paccanaro, Mark Gerstein, Koon-Kiu Yan
The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data. BMC Bioinform. 21 (1) (2020)
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Bioinform. 33 (14) (2017)
Koon-Kiu Yan, Shaoke Lou, Mark Gerstein
MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions. PLoS Comput. Biol. 13 (7) (2017)
Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel S. Rozowsky, William Meyerson, Mark B. Gerstein
Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors. PLoS Comput. Biol. 11 (4) (2015)
Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder
Comparative analysis of regulatory information and circuits across distant species Open. Nat. 512 (7515) (2014)
Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon-Kiu Yan, Philip M. Kim, Michael Snyder, Mark B. Gerstein
Measuring the Evolutionary Rewiring of Biological Networks. PLoS Comput. Biol. 7 (1) (2011)
Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Comput. Biol. 7 (11) (2011)
Koon-Kiu Yan, Mark Gerstein
Hierarchical analysis of regulatory networks and cross-disciplinary comparison with the Linux call graph. GENSiPS (2010)
Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets. PLoS Comput. Biol. 6 (5) (2010)
Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov
Ranking Scientific Publications Using a Simple Model of Network Traffic CoRR (2006)