Hui Lu

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 21

Top Topics

Gene Expression

Association Analysis

Top Venues

Briefings Bioinform.

Publications

Hongrui Liu, Yuanyuan Gui, Hui Lu, Manhua Liu
A sparse transformer generation network for brain imaging genetic association. Pattern Recognit. 156 (2024)
Xiao Xiao, Yan Kong, Ronghan Li, Zuoheng Wang, Hui Lu
Transformer with convolution and graph-node co-embedding: An accurate and interpretable vision backbone for predicting gene expressions from local histopathological image. Medical Image Anal. 91 (2024)
Shu Wang, Xiaocheng Zhou, Yan Kong, Hui Lu
Superresolved spatial transcriptomics transferred from a histological context. Appl. Intell. 53 (24) (2023)
Zhiwei Cheng, Leijie Li, Yuening Zhang, Yongyong Ren, Jianlei Gu, Xinbo Wang, Hongyu Zhao, Hui Lu
HBV-infected hepatocellular carcinoma can be robustly classified into three clinically relevant subgroups by a novel analytical protocol. Briefings Bioinform. 24 (2) (2023)
Jianlei Gu, Jiawei Dai, Hui Lu, Hongyu Zhao
Comprehensive Analysis of Ubiquitously Expressed Genes in Humans from A Data-driven Perspective. Genom. Proteom. Bioinform. 21 (1) (2023)
Daoyi Huang, Jianping Jiang, Tingting Zhao, Shengnan Wu, Pin Li, Yongfen Lyu, Jincai Feng, Mingyue Wei, Zhixing Zhu, Jianlei Gu, Yongyong Ren, Guangjun Yu, Hui Lu
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype. Bioinform. 39 (9) (2023)
Tiantian Liu, Peirong Xu, Yueyao Du, Hui Lu, Hongyu Zhao, Tao Wang
MZINBVA: variational approximation for multilevel zero-inflated negative-binomial models for association analysis in microbiome surveys. Briefings Bioinform. 23 (1) (2022)
Yuening Zhang, Li Qiu, Yongyong Ren, Zhiwei Cheng, Leijie Li, Siqiong Yao, Chengdong Zhang, Zhiguo Luo, Hui Lu
A meta-learning approach to improving radiation response prediction in cancers. Comput. Biol. Medicine 150 (2022)
Fan Yang, Wenchuan Wang, Fang Wang, Yuan Fang, Duyu Tang, Junzhou Huang, Hui Lu, Jianhua Yao
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data. Nat. Mac. Intell. 4 (10) (2022)
Xujun Wang, Zhengtao Zhang, Wenyi Qin, Shiyi Liu, Cong Liu, Georgi Z. Genchev, Lijian Hui, Hongyu Zhao, Hui Lu
: An Integrative Method for Identification of Drug Response-related Transcriptional Regulators. Genom. Proteom. Bioinform. 19 (4) (2021)
Fangli Dong, Yong He, Tao Wang, Dong Han, Hui Lu, Hongyu Zhao
Predicting viral exposure response from modeling the changes of co-expression networks using time series gene expression data. BMC Bioinform. 21 (1) (2020)
Leijie Li, Dongxue Che, Xiaodan Wang, Peng Zhang, Siddiq Ur Rahman, Jianbang Zhao, Jiantao Yu, Shiheng Tao, Hui Lu, Mingzhi Liao
CellSim: a novel software to calculate cell similarity and identify their co-regulation networks. BMC Bioinform. 20 (1) (2019)
Guang-Jun Yu, Jianlei Gu, Wenbin Cui, Jianping Jiang, Yang Wang, Georgi Z. Genchev, Ting Lu, Hui Lu
Identifying and characterizing the effects of calendar and environmental conditions on pediatric admissions in Shanghai. J. Big Data 6 (2019)
Wenyi Qin, Hui Lu
A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis. BioData Min. 11 (1) (2018)
Xiaofeng Gong, Jianping Jiang, Zhongqu Duan, Hui Lu
A new method to measure the semantic similarity from query phenotypic abnormalities to diseases based on the human phenotype ontology. BMC Bioinform. (4) (2018)
Dennis M. Bergau, Cong Liu, Hui Lu
Prediction of human QT prolongation liability based on pre-clinical RNA expression profiles. BIBM (2017)
Jianlei Gu, Yi-Zhong Wang, Shi-Yi Liu, Guang-Jun Yu, Ting Zhang, Hui Lu
Gut microbiota community adaption during young children fecal microbiota transplantation by 16s rDNA sequencing. Neurocomputing 206 (2016)
Jianlei Gu, Yao Lu, Shi-Yi Liu, Cong Liu, Hui Lu
A novel scoring estimator to screening for oncogenic chimeric transcripts in cancer transcriptome sequencing. BIBM (2016)
Cong Liu, Jianping Jiang, Jianlei Gu, Zhangsheng Yu, Tao Wang, Hui Lu
High-dimensional omics data analysis using a variable screening protocol with prior knowledge integration (SKI). BMC Syst. Biol. 10 (4) (2016)
Guang-Jun Yu, Wenbin Cui, Li Zhou, David W. Bates, Jianlei Gu, Hui Lu
Implementation of a city-wide Health Information Exchange solution in the largest metropolitan region in China. BIBM (2016)
Wenyi Qin, Cong Liu, Monsheel Sodhi, Hui Lu
Meta-analysis of sex differences in gene expression in schizophrenia. BMC Syst. Biol. 10 (S-1) (2016)
Yao Lu, Yulan Lu, Jingyuan Deng, Hai Peng, Hui Lu, Long Jason Lu
A novel essential domain perspective for exploring gene essentiality. Bioinform. 31 (18) (2015)
Yao Lu, Jingyuan Deng, Judith C. Rhodes, Hui Lu, Long Jason Lu
Predicting essential genes for identifying potential drug targets in Aspergillus fumigatus. Comput. Biol. Chem. 50 (2014)
Morten Källberg, Nitin Bhardwaj, Robert E. Langlois, Hui Lu
A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains. Bioinform. 28 (18) (2012)
Nitin Bhardwaj, Mark Gerstein, Hui Lu
Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique. BMC Bioinform. 11 (S-1) (2010)
Matthew B. Carson, Robert E. Langlois, Hui Lu
NAPS: a residue-level nucleic acid-binding prediction server. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Morten Källberg, Hui Lu
An improved machine learning protocol for the identification of correct Sequest search results. BMC Bioinform. 11 (2010)
Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets. PLoS Comput. Biol. 6 (5) (2010)
Nitin Bhardwaj, Hui Lu
Co-Expression among Constituents of a Motif in the protein-protein Interaction Network. J. Bioinform. Comput. Biol. 7 (1) (2009)
Zhi-Qiang Ye, Shuqi Zhao, Ge Gao, Xiao-Qiao Liu, Robert E. Langlois, Hui Lu, Liping Wei
Finding new structural and sequence attributes to predict possible disease association of single amino acid polymorphism (SAP). Bioinform. 23 (12) (2007)
Nitin Bhardwaj, Robert V. Stahelin, Guijun Zhao, Wonhwa Cho, Hui Lu
MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins. Bioinform. 23 (22) (2007)
Robert E. Langlois, Alice Diec, Ognjen Perisic, Yang Dai, Hui Lu
Improved protein fold assignment using support vector machines. Int. J. Bioinform. Res. Appl. 1 (3) (2005)
Nitin Bhardwaj, Hui Lu
Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinform. 21 (11) (2005)