Alexej Abyzov

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 7

Top Topics

Memory Efficient

Shape Variations

Iterative Deepening

Top Venues

PLoS Comput. Biol.

Publications

Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov
Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons. PLoS Comput. Biol. 18 (11) (2022)
Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov
All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons. PLoS Comput. Biol. 18 (4) (2022)
Justin Wood, Nicholas J. Matiasz, Alcino J. Silva, William Hsu, Alexej Abyzov, Wei Wang
OpBerg: Discovering Causal Sentences Using Optimal Alignments. DaWaK (2022)
Quang Tran, Alexej Abyzov
LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads. Bioinform. 37 (7) (2021)
Vivekananda Sarangi, Alexandre Jourdon, Taejeong Bae, Arijit Panda, Flora Vaccarino, Alexej Abyzov
SCELLECTOR: ranking amplification bias in single cells using shallow sequencing. BMC Bioinform. 21 (1) (2020)
Justin Wood, Nicholas J. Matiasz, Alcino J. Silva, William Hsu, Alexej Abyzov, Wei Wang
OpBerg: Discovering causal sentences using optimal alignments. CoRR (2019)
Yan Zhang, Shantao Li, Alexej Abyzov, Mark B. Gerstein
Landscape and variation of novel retroduplications in 26 human populations. PLoS Comput. Biol. 13 (6) (2017)
Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. Bioinform. 31 (16) (2015)
John C. Mu, Marghoob Mohiyuddin, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications. Bioinform. 31 (9) (2015)
Alexej Abyzov, Mark Gerstein
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision. Bioinform. 27 (5) (2011)
Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets. PLoS Comput. Biol. 6 (5) (2010)
Alexej Abyzov, Alper Uzun, Phyllis R. Strauss, Valentin A. Ilyin
An AP Endonuclease 1-DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces. PLoS Comput. Biol. 4 (4) (2008)
Alper Uzun, Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. Nucleic Acids Res. 35 (Database-Issue) (2007)
Alexej Abyzov, Mounir Errami, Chesley M. Leslin, Valentin A. Ilyin
Friend, an integrated analytical front-end application for bioinformatics. Bioinform. 21 (18) (2005)
Ihsan A. Shehadi, Alexej Abyzov, Alper Uzun, Ying Wei, Leonel F. Murga, Valentin A. Ilyin, Mary Jo Ondrechen
Active Site Prediction for Comparative Model Structures with Thematics. J. Bioinform. Comput. Biol. 3 (1) (2005)
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
Structural exon database, SEDB, mapping exon boundaries on multiple protein structures. Bioinform. 20 (11) (2004)