Jianhua Yao

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 45

Top Topics

Image Classification

Hough Transform

Top Venues

Briefings Bioinform.

Publications

Zinan Zheng, Yang Liu, Jia Li, Jianhua Yao, Yu Rong
Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Physical Dynamics Learning. CoRR (2024)
Kehua Feng, Keyan Ding, Weijie Wang, Xiang Zhuang, Zeyuan Wang, Ming Qin, Yu Zhao, Jianhua Yao, Qiang Zhang, Huajun Chen
SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models. CoRR (2024)
Fan Xu, Yu Zhao, Bingzhe Wu, Yueshan Huang, Qin Ren, Yang Xiao, Bing He, Jie Zheng, Jianhua Yao
A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification. AAAI (2024)
Yikun Zhang, Geyan Ye, Chaohao Yuan, Bo Han, Long-Kai Huang, Jianhua Yao, Wei Liu, Yu Rong
Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation. CoRR (2024)
Zinan Zheng, Yang Liu, Jia Li, Jianhua Yao, Yu Rong
Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Broad Physical Dynamics Learning. KDD (2024)
Chaohao Yuan, Songyou Li, Geyan Ye, Yikun Zhang, Long-Kai Huang, Wenbing Huang, Wei Liu, Jianhua Yao, Yu Rong
Functional Protein Design with Local Domain Alignment. CoRR (2024)
Songhui Diao, Wenxue Zhou, Chenchen Qin, Jun Liao, Junzhou Huang, Wenming Yang, Jianhua Yao
An Unsupervised Multispectral Image Registration Network for Skin Diseases. MICCAI (10) (2023)
Mingcai Chen, Yu Zhao, Zhonghuang Wang, Bing He, Jianhua Yao
A Noisy-Label-Learning Formulation for Immune Repertoire Classification and Disease-Associated Immune Receptor Sequence Identification. CoRR (2023)
Yang Xiao, Yueshan Huang, Yu Zhao, Fan Xu, Qin Ren, Bing He, Jianhua Yao, Xiao Liu
Multimodal-AIR-BERT: A Multimodal Pre-trained Model for Antigen Specificity Prediction in Adaptive Immune Receptors. BIBM (2023)
Wentao Pan, Zhe Xu, Jiangpeng Yan, Zihan Wu, Raymond Kai-Yu Tong, Xiu Li, Jianhua Yao
Semi-supervised Semantic Segmentation Meets Masked Modeling: Fine-grained Locality Learning Matters in Consistency Regularization. CoRR (2023)
Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song
Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification. Bioinform. 39 (3) (2023)
Jianye Pang, Cheng Jiang, Yihao Chen, Jianbo Chang, Ming Feng, Renzhi Wang, Jianhua Yao
3D Shuffle-Mixer: An Efficient Context-Aware Vision Learner of Transformer-MLP Paradigm for Dense Prediction in Medical Volume. IEEE Trans. Medical Imaging 42 (5) (2023)
Zhikang Wang, Qian Gao, Xiaoping Yi, Xinyu Zhang, Yiwen Zhang, Daokun Zhang, Pietro Liò, Chris Bain, Richard Bassed, Shanshan Li, Yuming Guo, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song
Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images. Comput. Methods Programs Biomed. 241 (2023)
Mingcai Chen, Yu Zhao, Zhonghuang Wang, Bing He, Jianhua Yao
A Noisy-Label-Learning Formulation for Immune Repertoire Classification and Disease-Associated Immune Receptor Sequence Identification. IJCAI (2023)
Wenxue Zhou, Chenchen Qin, Jianbo Chang, Yixun Liu, Yihao Chen, Ming Feng, Renzhi Wang, Wenming Yang, Jianhua Yao
Standardized measurement of mid-surface shift of brain based on deep Hough transform. Comput. Medical Imaging Graph. 108 (2023)
Qin Ren, Yu Zhao, Bing He, Bingzhe Wu, Sijie Mai, Fan Xu, Yueshan Huang, Yonghong He, Junzhou Huang, Jianhua Yao
IIB-MIL: Integrated Instance-Level and Bag-Level Multiple Instances Learning with Label Disambiguation for Pathological Image Analysis. MICCAI (6) (2023)
Fang Wang, Fan Yang, Longkai Huang, Wei Li, Jiangning Song, Robin B. Gasser, Ruedi Aebersold, Guohua Wang, Jianhua Yao
Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling. Nat. Mac. Intell. 5 (11) (2023)
Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao
Human-Machine Interactive Tissue Prototype Learning for Label-Efficient Histopathology Image Segmentation. IPMI (2023)
Yu Zhao, Xiaona Su, Weitong Zhang, Sijie Mai, Zhimeng Xu, Chenchen Qin, Rongshan Yu, Bing He, Jianhua Yao
SC-AIR-BERT: a pre-trained single-cell model for predicting the antigen-binding specificity of the adaptive immune receptor. Briefings Bioinform. 24 (4) (2023)
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Qinghua Hu, Bingzhe Wu, Changqing Zhang, Jianhua Yao
Reweighted Mixup for Subpopulation Shift. CoRR (2023)
Yu Zhao, Bing He, Zhimeng Xu, Yidan Zhang, Xuan Zhao, Zhi-An Huang, Fan Yang, Liang Wang, Lei Duan, Jiangning Song, Jianhua Yao
Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire. Briefings Bioinform. 24 (1) (2023)
Daoan Zhang, Weitong Zhang, Bing He, Jianguo Zhang, Chenchen Qin, Jianhua Yao
DNAGPT: A Generalized Pretrained Tool for Multiple DNA Sequence Analysis Tasks. CoRR (2023)
Jing Xu, Fuyi Li, Chen Li, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Seiya Imoto, Jianhua Yao, Tatsuya Akutsu, Jiangning Song
iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities. Briefings Bioinform. 24 (4) (2023)
Dasheng Wu, Haoming Li, Jianbo Chang, Chenchen Qin, Yihao Chen, Yixun Liu, Qinghua Zhang, Bingsheng Huang, Ming Feng, Renzhi Wang, Jianhua Yao
Automatic Brain Midline Surface Delineation on 3D CT Images With Intracranial Hemorrhage. IEEE Trans. Medical Imaging 41 (9) (2022)
Jiangpeng Yan, ChengHui Yu, Hanbo Chen, Zhe Xu, Junzhou Huang, Xiu Li, Jianhua Yao
Seeking Common Ground While Reserving Differences: Multiple Anatomy Collaborative Framework for Undersampled MRI Reconstruction. CoRR (2022)
Fan Yang, Wenchuan Wang, Fang Wang, Yuan Fang, Duyu Tang, Junzhou Huang, Hui Lu, Jianhua Yao
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data. Nat. Mac. Intell. 4 (10) (2022)
Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Jiangning Song
Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification. CoRR (2022)
Jianye Pang, Cheng Jiang, Yihao Chen, Jianbo Chang, Ming Feng, Renzhi Wang, Jianhua Yao
3D Shuffle-Mixer: An Efficient Context-Aware Vision Learner of Transformer-MLP Paradigm for Dense Prediction in Medical Volume. CoRR (2022)
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Bingzhe Wu, Changqing Zhang, Jianhua Yao
UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup. CoRR (2022)
Jiawei Li, Fan Yang, Fang Wang, Yu Rong, Peilin Zhao, Shizhan Chen, Jianhua Yao, Jijun Tang, Fei Guo
Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. BIBM (2022)
Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao
Human-machine Interactive Tissue Prototype Learning for Label-efficient Histopathology Image Segmentation. CoRR (2022)
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Bingzhe Wu, Changqing Zhang, Jianhua Yao
UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup. NeurIPS (2022)
Chenchen Qin, Wenxue Zhou, Jianbo Chang, Yihao Chen, Dasheng Wu, Yixun Liu, Ming Feng, Renzhi Wang, Wenming Yang, Jianhua Yao
Ideal Midsagittal Plane Detection Using Deep Hough Plane Network for Brain Surgical Planning. MICCAI (8) (2022)
Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao
Towards Better Understanding and Better Generalization of Low-shot Classification in Histology Images with Contrastive Learning. ICLR (2022)
Hanbo Chen, Jiawei Yang, Daniel Maxim Iascone, Lijuan Liu, Lei He, Hanchuan Peng, Jianhua Yao
TreeMoCo: Contrastive Neuron Morphology Representation Learning. NeurIPS (2022)
Yu Zhao, Zhenyu Lin, Kai Sun, Yidan Zhang, Junzhou Huang, Liansheng Wang, Jianhua Yao
SETMIL: Spatial Encoding Transformer-Based Multiple Instance Learning for Pathological Image Analysis. MICCAI (2) (2022)
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification. CoRR (2022)
Mingcai Chen, Yu Zhao, Bing He, Zongbo Han, Bingzhe Wu, Jianhua Yao
Learning with Noisy Labels over Imbalanced Subpopulations. CoRR (2022)
Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. ECCV (21) (2022)
Zongbo Han, Fan Yang, Junzhou Huang, Changqing Zhang, Jianhua Yao
Multimodal Dynamics: Dynamical Fusion for Trustworthy Multimodal Classification. CVPR (2022)
Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao, Cangzhi Jia, Jiangning Song
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations. Briefings Bioinform. 23 (6) (2022)
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. MICCAI (2) (2022)
Jiangpeng Yan, Hanbo Chen, Xiu Li, Jianhua Yao
Deep contrastive learning based tissue clustering for annotation-free histopathology image analysis. Comput. Medical Imaging Graph. 97 (2022)
Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. CoRR (2022)
Xiaohan Xing, Fan Yang, Hang Li, Jun Zhang, Yu Zhao, Mingxuan Gao, Junzhou Huang, Jianhua Yao
Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis. Bioinform. 38 (8) (2022)