Hanbo Chen

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 46

Top Topics

Groupwise Registration

Sparse Representation

Top Venues

Medical Image Anal.

Publications

Hanbo Chen, Bin Xiong, Yuguo Lu, Qiyun Jiang, Lishan Huang, Shuai Zhou
Three-Dimensional Modeling of Marine Controlled Source Electromagnetic Using a New High-Order Finite Element Method With an Absorption Boundary Condition. IEEE Trans. Geosci. Remote. Sens. 61 (2023)
Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao
Human-Machine Interactive Tissue Prototype Learning for Label-Efficient Histopathology Image Segmentation. IPMI (2023)
Jiangpeng Yan, ChengHui Yu, Hanbo Chen, Zhe Xu, Junzhou Huang, Xiu Li, Jianhua Yao
Seeking Common Ground While Reserving Differences: Multiple Anatomy Collaborative Framework for Undersampled MRI Reconstruction. CoRR (2022)
Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao
Human-machine Interactive Tissue Prototype Learning for Label-efficient Histopathology Image Segmentation. CoRR (2022)
Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao
Towards better understanding and better generalization of few-shot classification in histology images with contrastive learning. CoRR (2022)
Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao
Towards Better Understanding and Better Generalization of Low-shot Classification in Histology Images with Contrastive Learning. ICLR (2022)
Hanbo Chen, Jiawei Yang, Daniel Maxim Iascone, Lijuan Liu, Lei He, Hanchuan Peng, Jianhua Yao
TreeMoCo: Contrastive Neuron Morphology Representation Learning. NeurIPS (2022)
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification. CoRR (2022)
Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. ECCV (21) (2022)
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. MICCAI (2) (2022)
Jiangpeng Yan, Hanbo Chen, Xiu Li, Jianhua Yao
Deep contrastive learning based tissue clustering for annotation-free histopathology image analysis. Comput. Medical Imaging Graph. 97 (2022)
Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. CoRR (2022)
Biao Wu, Hanbo Chen, Zhikang Luo
Board games for quantum computers. Sci. China Inf. Sci. 64 (2) (2021)
Hanbo Chen, Kang Wang, Yuyao Zhu, Jiangpeng Yan, Yan Ji, Jingjing Li, Dong Xie, Junzhou Huang, Shuqun Cheng, Jianhua Yao
From Pixel to Whole Slide: Automatic Detection of Microvascular Invasion in Hepatocellular Carcinoma on Histopathological Image via Cascaded Networks. MICCAI (8) (2021)
Jiangpeng Yan, Hanbo Chen, Kang Wang, Yan Ji, Yuyao Zhu, Jingjing Li, Dong Xie, Zhe Xu, Junzhou Huang, Shuqun Cheng, Xiu Li, Jianhua Yao
Hierarchical Attention Guided Framework for Multi-resolution Collaborative Whole Slide Image Segmentation. MICCAI (8) (2021)
Biao Wu, Hanbo Chen, Zhikang Luo
Board Games for Quantum Computers. CoRR (2020)
Yujie Li, Heng Huang, Hanbo Chen, Tianming Liu
Deep Neural Networks for In Situ Hybridization Grid Completion and Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
He Zheng, Hanbo Chen, Junzhou Huang, Xuzhi Li, Xiao Han, Jianhua Yao
Polyp Tracking in Video Colonoscopy Using Optical Flow With an On-The-Fly Trained CNN. ISBI (2019)
Hanbo Chen, Xiao Han, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Junzhou Huang, Jianhua Yao
Rectified Cross-Entropy and Upper Transition Loss for Weakly Supervised Whole Slide Image Classifier. MICCAI (1) (2019)
Yifan Zhang, Hanbo Chen, Ying Wei, Peilin Zhao, Jiezhang Cao, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Jinlong Hou, Xiao Han, Jianhua Yao, Qingyao Wu, Mingkui Tan, Junzhou Huang
From Whole Slide Imaging to Microscopy: Deep Microscopy Adaptation Network for Histopathology Cancer Image Classification. MICCAI (1) (2019)
Yu Zhao, Qinglin Dong, Shu Zhang, Wei Zhang, Hanbo Chen, Xi Jiang, Lei Guo, Xintao Hu, Junwei Han, Tianming Liu
Automatic Recognition of fMRI-Derived Functional Networks Using 3-D Convolutional Neural Networks. IEEE Trans. Biomed. Eng. 65 (9) (2018)
Fangfei Ge, Hanbo Chen, Tuo Zhang, Xianqiao Wang, Lin Yuan, Xintao Hu, Lei Guo, Tianming Liu
A novel framework for analyzing cortical folding patterns based on sulcal baselines and gyral crestlines. ISBI (2018)
Xuhui Chen, Yi Lu, Junjie Bai, Youbing Yin, Kunlin Cao, Yuwei Li, Hanbo Chen, Qi Song, Jun Wu
Train a 3D U-Net to segment cranial vasculature in CTA volume without manual annotation. ISBI (2018)
Jiali Liu, Wanyu Li, Ningbo Zhao, Kunlin Cao, Youbing Yin, Qi Song, Hanbo Chen, Xuehao Gong
Integrate Domain Knowledge in Training CNN for Ultrasonography Breast Cancer Diagnosis. MICCAI (2) (2018)
Tuo Zhang, Jun Kong, Ke Jing, Hanbo Chen, Xi Jiang, Longchuan Li, Lei Guo, Jianfeng Lu, Xiaoping Hu, Tianming Liu
Optimization of macaque brain DMRI connectome by neuron tracing and myelin stain data. Comput. Medical Imaging Graph. 69 (2018)
Tuo Zhang, Mir Jalil Razavi, Hanbo Chen, Yujie Li, Xiao Li, Longchuan Li, Lei Guo, Xiaoping Hu, Tianming Liu, Xianqiao Wang
Mechanisms of circumferential gyral convolution in primate brains. J. Comput. Neurosci. 42 (3) (2017)
Yu Zhao, Qinglin Dong, Hanbo Chen, Armin Iraji, Yujie Li, Milad Makkie, Zhifeng Kou, Tianming Liu
Constructing fine-granularity functional brain network atlases via deep convolutional autoencoder. Medical Image Anal. 42 (2017)
Dehua Ren, Yu Zhao, Hanbo Chen, Qinglin Dong, Jinglei Lv, Tianming Liu
3-D functional brain network classification using Convolutional Neural Networks. ISBI (2017)
Hanbo Chen, Yu Zhao, Yujie Li, Jinglei Lv, Tianming Liu
Inter-subject fMRI registration based on functional networks. ISBI (2017)
Hanbo Chen, Yujie Li, Fangfei Ge, Gang Li, Dinggang Shen, Tianming Liu
Gyral net: A new representation of cortical folding organization. Medical Image Anal. 42 (2017)
Yu Zhao, Shu Zhang, Hanbo Chen, Wei Zhang, Jinglei Lv, Xi Jiang, Dinggang Shen, Tianming Liu
A novel framework for groupwise registration of fMRI images based on common functional networks. ISBI (2017)
Mir Jalil Razavi, Tuo Zhang, Hanbo Chen, Yujie Li, Simon Platt, Yu Zhao, Lei Guo, Xiaoping Hu, Xianqiao Wang, Tianming Liu
Radial Structure Scaffolds Convolution Patterns of Developing Cerebral Cortex. Frontiers Comput. Neurosci. 11 (2017)
Hanbo Chen, Daniel Maxim Iascone, Nuno Maçarico da Costa, Ed Lein, Tianming Liu, Hanchuan Peng
Fast assembling of neuron fragments in serial 3D sections. Brain Informatics 4 (3) (2017)
Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Meng Li, Hanchuan Peng, Joe Z. Tsien, Tianming Liu
Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images. Neuroinformatics 15 (3) (2017)
Jinglei Lv, Armin Iraji, Hanbo Chen, Fangfei Ge, Lei Guo, Xin Zhang, Zhifeng Kou, Tianming Liu
Group-wise sparse representation of brain states reveal network abnormalities in mild traumatic brain injury. ISBI (2016)
Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Hanchuan Peng, Joe Z. Tsien, Tianming Liu
Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding. MICCAI (1) (2016)
Hanbo Chen, Hang Xiao, Tianming Liu, Hanchuan Peng
SmartTracing: self-learning-based Neuron reconstruction. Brain Informatics 2 (3) (2015)
Tuo Zhang, Jun Kong, Ke Jing, Hanbo Chen, Xi Jiang, Longchuan Li, Lei Guo, Jianfeng Lu, Xiaoping Hu, Tianming Liu
Multi-scale and Multimodal Fusion of Tract-Tracing, Myelin Stain and DTI-derived Fibers in Macaque Brains. MICCAI (2) (2015)
Hanbo Chen, Armin Iraji, Xi Jiang, Jinglei Lv, Zhifeng Kou, Tianming Liu
Longitudinal Analysis of Brain Recovery after Mild Traumatic Brain Injury Based on Groupwise Consistent Brain Network Clusters. MICCAI (2) (2015)
Ke Jing, Tuo Zhang, Jianfeng Lu, Hanbo Chen, Xi Jiang, Lei Guo, Longchuan Li, Xiaoping Hu, Jinglei Lv, Bao Ge, Tianming Liu
Multiscale and multimodal fusion of tract-tracing and DTI-derived fibers in macaque brains. ISBI (2015)
Jinglei Lv, Xi Jiang, Xiang Li, Dajiang Zhu, Shu Zhang, Shijie Zhao, Hanbo Chen, Tuo Zhang, Xintao Hu, Junwei Han, Jieping Ye, Lei Guo, Tianming Liu
Holistic Atlases of Functional Networks and Interactions Reveal Reciprocal Organizational Architecture of Cortical Function. IEEE Trans. Biomed. Eng. 62 (4) (2015)
Tuo Zhang, Hanbo Chen, Xi Jiang, Bao Ge, Lei Guo, Tianming Liu
Group-wise consistent sulcal fundi segmentation based on DMRI-derived ODF features. ISBI (2015)
Yue Yuan, Hanbo Chen, Jianfeng Lu, Tuo Zhang, Tianming Liu
Distance Networks for Morphological Profiling and Characterization of DICCCOL Landmarks. MICCAI (2) (2015)
Xi Jiang, Tuo Zhang, Dajiang Zhu, Kaiming Li, Hanbo Chen, Jinglei Lv, Xintao Hu, Junwei Han, Dinggang Shen, Lei Guo, Tianming Liu
Anatomy-Guided Dense Individualized and Common Connectivity-Based Cortical Landmarks (A-DICCCOL). IEEE Trans. Biomed. Eng. 62 (4) (2015)
Jinglei Lv, Xi Jiang, Xiang Li, Dajiang Zhu, Hanbo Chen, Tuo Zhang, Shu Zhang, Xintao Hu, Junwei Han, Heng Huang, Jing Zhang, Lei Guo, Tianming Liu
Sparse representation of whole-brain fMRI signals for identification of functional networks. Medical Image Anal. 20 (1) (2015)
Hanbo Chen, Tao Liu, Yu Zhao, Tuo Zhang, Yujie Li, Meng Li, Hongmiao Zhang, Hui Kuang, Lei Guo, Joe Z. Tsien, Tianming Liu
Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data. NeuroImage 115 (2015)
Dajiang Zhu, Tuo Zhang, Xi Jiang, Xintao Hu, Hanbo Chen, Ning Yang, Jinglei Lv, Junwei Han, Lei Guo, Tianming Liu
Fusing DTI and fMRI data: A survey of methods and applications. NeuroImage 102 (2014)
Dajiang Zhu, Jinglei Lv, Hanbo Chen, Tianming Liu
Group-Wise Optimization of Common Brain Landmarks with Joint Structural and Functional Regulations. MICCAI (2) (2014)
Hanbo Chen, Yu Zhao, Tuo Zhang, Hongmiao Zhang, Hui Kuang, Meng Li, Joe Z. Tsien, Tianming Liu
Construct and Assess Multimodal Mouse Brain Connectomes via Joint Modeling of Multi-scale DTI and Neuron Tracer Data. MICCAI (3) (2014)
Hanbo Chen, Kaiming Li, Dajiang Zhu, Lei Guo, Xi Jiang, Tianming Liu
Group-wise optimization and individualized prediction of structural connectomes. ISBI (2014)
Hanbo Chen, Xiang Yu, Xi Jiang, Kaiming Li, Longchuan Li, Xintao Hu, Junwei Han, Lei Guo, Xiaoping Hu, Tianming Liu
Evolutionarily-preserved consistent gyral folding patterns across primate brains. ISBI (2014)
Tuo Zhang, Hanbo Chen, Lei Guo, Kaiming Li, Longchuan Li, Shu Zhang, Dinggang Shen, Xiaoping Hu, Tianming Liu
Characterization of U-shape streamline fibers: Methods and applications. Medical Image Anal. 18 (5) (2014)
Xiang Yu, Hanbo Chen, Tuo Zhang, Xintao Hu, Lei Guo, Tianming Liu
Joint analysis of gyral folding and fiber shape patterns. ISBI (2013)
Yixuan Yuan, Xi Jiang, Dajiang Zhu, Hanbo Chen, Kaiming Li, Peili Lv, Xiang Yu, Xiaojin Li, Shu Zhang, Tuo Zhang, Xintao Hu, Junwei Han, Lei Guo, Tianming Liu
Meta-Analysis of Functional Roles of DICCCOLs. Neuroinformatics 11 (1) (2013)
Dajiang Zhu, Xiang Li, Xi Jiang, Hanbo Chen, Dinggang Shen, Tianming Liu
Exploring High-Order Functional Interactions via Structurally-Weighted LASSO Models. IPMI (2013)
Xin Zhang, Lei Guo, Xiang Li, Tuo Zhang, Dajiang Zhu, Kaiming Li, Hanbo Chen, Jinglei Lv, Changfeng Jin, Qun Zhao, Lingjiang Li, Tianming Liu
Characterization of task-free and task-performance brain states via functional connectome patterns. Medical Image Anal. 17 (8) (2013)
Peng Wang, Dajiang Zhu, Xiang Li, Hanbo Chen, Xi Jiang, Li Sun, Qingjiu Cao, Li An, Tianming Liu, Yufeng Wang
Identifying functional connectomics abnormality in attention deficit hyperactivity disorder. ISBI (2013)
Shu Zhang, Xiang Li, Jinglei Lv, Xi Jiang, Dajiang Zhu, Hanbo Chen, Tuo Zhang, Lei Guo, Tianming Liu
Sparse Representation of Higher-Order Functional Interaction Patterns in Task-Based FMRI Data. MICCAI (3) (2013)
Hanbo Chen, Tuo Zhang, Tianming Liu
Identifying Group-Wise Consistent White Matter Landmarks via Novel Fiber Shape Descriptor. MICCAI (1) (2013)
Hanbo Chen, Kaiming Li, Dajiang Zhu, Tianming Liu
Identifying consistent brain networks via maximizing predictability of functional connectome from structural connectome. ISBI (2013)
Hanbo Chen, Kaiming Li, Dajiang Zhu, Xi Jiang, Yixuan Yuan, Peili Lv, Tuo Zhang, Lei Guo, Dinggang Shen, Tianming Liu
Inferring Group-Wise Consistent Multimodal Brain Networks via Multi-View Spectral Clustering. IEEE Trans. Medical Imaging 32 (9) (2013)
Jia Chen, Jianfeng Lu, Hanbo Chen, Dajiang Zhu, Tianming Liu
Assessing regularity and variability of cortical folding patterns of dicccols. ISBI (2013)
Hanbo Chen, Kaiming Li, Dajiang Zhu, Tuo Zhang, Changfeng Jin, Lei Guo, Lingjiang Li, Tianming Liu
Inferring Group-Wise Consistent Multimodal Brain Networks via Multi-view Spectral Clustering. MICCAI (3) (2012)
Tuo Zhang, Lei Guo, Hanbo Chen, Xintao Hu, Kaiming Li, Tianming Liu
Constructing Fiber Atlases for Functional ROIs via fMRI-Guided DTI Image Registration. MBIA (2012)
Hanbo Chen, Xiao Cai, Dajiang Zhu, Feiping Nie, Tianming Liu, Heng Huang
Group-Wise Consistent Parcellation of Gyri via Adaptive Multi-view Spectral Clustering of Fiber Shapes. MICCAI (2) (2012)
Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Hanbo Chen, Yixuan Yuan, Jinglei Lv, Fan Deng, Xi Jiang, Tuo Zhang, Xintao Hu, Degang Zhang, L. Stephen Miller, Tianming Liu
Visual analytics of brain networks. NeuroImage 61 (1) (2012)
Dajiang Zhu, Kaiming Li, Carlos Faraco, Fan Deng, Degang Zhang, Xi Jiang, Hanbo Chen, Lei Guo, L. Stephen Miller, Tianming Liu
Optimization of functional brain ROIs via maximization of consistency of structural connectivity profiles. ISBI (2011)
Hanbo Chen, Paul C. Boutros
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinform. 12 (2011)
Dajiang Zhu, Kaiming Li, Fan Deng, Degang Zhang, Xi Jiang, Hanbo Chen, Lei Guo, L. Stephen Miller, Tianming Liu
Fine granularity parcellation of gyrus via fiber shape and connectivity based features. ISBI (2011)
Degang Zhang, Lei Guo, Dajiang Zhu, Tuo Zhang, Xintao Hu, Kaiming Li, Xi Jiang, Hanbo Chen, Jinglei Lv, Fan Deng, Qun Zhao
Identification of Cortical Landmarks Based on Consistent Connectivity to Subcortical Structures. MBIA (2011)
Hanbo Chen, Tuo Zhang, Kaiming Li, Xintao Hu, Lei Guo, Tianming Liu
Assessing Regularity and Variability of Cortical Folding Patterns of Working Memory ROIs. MICCAI (2) (2011)
Dajiang Zhu, Degang Zhang, Carlos Faraco, Kaiming Li, Fan Deng, Hanbo Chen, Xi Jiang, Lei Guo, L. Stephen Miller, Tianming Liu
Discovering Dense and Consistent Landmarks in the Brain. IPMI (2011)
Degang Zhang, Lei Guo, Xintao Hu, Kaiming Li, Dajiang Zhu, Xi Jiang, Hanbo Chen, Fan Deng, Qun Zhao, Tianming Liu
Identification of cortical landmarks based on structural connectivity to subcortical regions. Int. J. Comput. Biol. Drug Des. 4 (4) (2011)
Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Fan Deng, Tuo Zhang, Xi Jiang, Degang Zhang, Hanbo Chen, Xintao Hu, L. Stephen Miller, Tianming Liu
Human-centered attention models for video summarization. ICMI-MLMI (2010)
Xintao Hu, Fan Deng, Kaiming Li, Tuo Zhang, Hanbo Chen, Xi Jiang, Jinglei Lv, Dajiang Zhu, Carlos Faraco, Degang Zhang, Arsham Mesbah, Junwei Han, Xian-Sheng Hua, Li Xie, L. Stephen Miller, Lei Guo, Tianming Liu
Bridging low-level features and high-level semantics via fMRI brain imaging for video classification. ACM Multimedia (2010)
Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Fan Deng, Tuo Zhang, Xi Jiang, Degang Zhang, Hanbo Chen, Xintao Hu, L. Stephen Miller, Tianming Liu
Individualized ROI Optimization via Maximization of Group-wise Consistency of Structural and Functional Profiles. NIPS (2010)
Hanbo Chen, Lei Guo, Jingxin Nie, Tuo Zhang, Xintao Hu, Tianming Liu
A Dynamic Skull Model for Simulation of Cerebral Cortex Folding. MICCAI (2) (2010)