Hanchuan Peng

ORCID

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 39

Top Venues

Publications

Feng Xiong, Peng Xie, Zuohan Zhao, Yiwei Li, Sujun Zhao, Linus Manubens-Gil, Lijuan Liu, Hanchuan Peng
DSM: Deep sequential model for complete neuronal morphology representation and feature extraction. Patterns 5 (1) (2024)
Hanchuan Peng, Peng Xie, Feng Xiong
Meet the authors: Hanchuan Peng, Peng Xie, and Feng Xiong. Patterns 5 (1) (2024)
Yik San Cheng, Runkai Zhao, Heng Wang, Hanchuan Peng, Weidong Cai
Boosting 3D Neuron Segmentation with 2D Vision Transformer Pre-trained on Natural Images. CoRR (2024)
Feng-Lei Fan, Yingxin Li, Hanchuan Peng, Tieyong Zeng, Fei Wang
Towards NeuroAI: Introducing Neuronal Diversity into Artificial Neural Networks. CoRR (2023)
Yufeng Liu, Ye Zhong, Xuan Zhao, Lijuan Liu, Liya Ding, Hanchuan Peng
Tracing weak neuron fibers. Bioinform. 39 (1) (2023)
Liya Ding, Xuan Zhao, Shuxia Guo, Yufeng Liu, Lijuan Liu, Yimin Wang, Hanchuan Peng
SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline. Frontiers Neuroinformatics 17 (2023)
Shuxia Guo, Xuan Zhao, Shengdian Jiang, Liya Ding, Hanchuan Peng
Image enhancement to leverage the 3D morphological reconstruction of single-cell neurons. Bioinform. 38 (2) (2022)
Yuanyuan Li, Jun Wu, Donghuan Lu, Chao Xu, Yefeng Zheng, Hanchuan Peng, Lei Qu
mBrainAligner-Web: a web server for cross-modal coherent registration of whole mouse brains. Bioinform. 38 (19) (2022)
Shengdian Jiang, Yimin Wang, Lijuan Liu, Liya Ding, Zongcai Ruan, Hong-Wei Dong, Giorgio A. Ascoli, Michael Hawrylycz, Hongkui Zeng, Hanchuan Peng
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. Neuroinformatics 20 (2) (2022)
Hanbo Chen, Jiawei Yang, Daniel Maxim Iascone, Lijuan Liu, Lei He, Hanchuan Peng, Jianhua Yao
TreeMoCo: Contrastive Neuron Morphology Representation Learning. NeurIPS (2022)
Shuxia Guo, Jie Xue, Jian Liu, Xiangqiao Ye, Yichen Guo, Di Liu, Xuan Zhao, Feng Xiong, Xiaofeng Han, Hanchuan Peng
Smart imaging to empower brain-wide neuroscience at single-cell levels. Brain Informatics 9 (1) (2022)
Heng Wang, Yang Song, Chaoyi Zhang, Jianhui Yu, Siqi Liu, Hanchuan Peng, Weidong Cai
Single Neuron Segmentation using Graph-based Global Reasoning with Auxiliary Skeleton Loss from 3D Optical Microscope Images. CoRR (2021)
Heng Wang, Yang Song, Chaoyi Zhang, Jianhui Yu, Siqi Liu, Hanchuan Peng, Tom Weidong Cai
Single Neuron Segmentation Using Graph-Based Global Reasoning with Auxiliary Skeleton Loss from 3D Optical Microscope Images. ISBI (2021)
Zihao Tang, Donghao Zhang, Yang Song, Heng Wang, Dongnan Liu, Chaoyi Zhang, Siqi Liu, Hanchuan Peng, Weidong Cai
3D Conditional Adversarial Learning for Synthesizing Microscopic Neuron Image Using Skeleton-to-Neuron Translation. ISBI (2020)
Yinghui Tan, Min Liu, Weixun Chen, Xueping Wang, Hanchuan Peng, Yaonan Wang
DeepBranch: Deep Neural Networks for Branch Point Detection in Biomedical Images. IEEE Trans. Medical Imaging 39 (4) (2020)
Cheng Li, Rongpin Wang, Zaiyi Liu, Meiyun Wang, Hongna Tan, Yaping Wu, Xinfeng Liu, Hui Sun, Rui Yang, Xin Liu, Ismail Ben Ayed, Hairong Zheng, Hanchuan Peng, Shanshan Wang
AIDE: Annotation-efficient deep learning for automatic medical image segmentation. CoRR (2020)
Hao Yuan, Na Zou, Shaoting Zhang, Hanchuan Peng, Shuiwang Ji
Learning Hierarchical and Shared Features for Improving 3D Neuron Reconstruction. ICDM (2019)
Min Liu, Weixun Chen, Chao Wang, Hanchuan Peng
A Multiscale Ray-Shooting Model for Termination Detection of Tree-Like Structures in Biomedical Images. IEEE Trans. Medical Imaging 38 (8) (2019)
Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Yue Wang, Dagan Feng, Hanchuan Peng, Weidong Cai
Segmenting Neuronal Structure in 3D Optical Microscope Images via Knowledge Distillation with Teacher-Student Network. ISBI (2019)
Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Heng Huang, Mei Chen, Hanchuan Peng, Weidong Cai
Multiscale Kernels for Enhanced U-Shaped Network to Improve 3D Neuron Tracing. CVPR Workshops (2019)
Jian Yang, Ming Hao, Xiaoyang Liu, Zhijiang Wan, Ning Zhong, Hanchuan Peng
FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree. Neuroinformatics 17 (2) (2019)
Zhi Zhou, Hsien-Chi Kuo, Hanchuan Peng, Fuhui Long
: an open deep learning toolbox for neuron tracing. Brain Informatics 5 (2) (2018)
Donghao Zhang, Siqi Liu, Yang Song, Dagan Feng, Hanchuan Peng, Weidong Cai
Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction. Neuroinformatics 16 (2) (2018)
Min Liu, Rong Gong, Weixun Chen, Hanchuan Peng
3D neuron tip detection in volumetric microscopy images using an adaptive ray-shooting model. Pattern Recognit. 75 (2018)
Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Rong Gao, Hanchuan Peng, Weidong Cai
Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images. DICTA (2018)
Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai
Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Tracking. IEEE Trans. Medical Imaging 37 (11) (2018)
Zihao Tang, Donghao Zhang, Siqi Liu, Yang Song, Hanchuan Peng, Weidong Cai
Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing. ICCV Workshops (2017)
Eduardo Conde-Sousa, Peter Szücs, Hanchuan Peng, Paulo Aguiar
N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions. Neuroinformatics 15 (1) (2017)
Ching-Wei Wang, Yu-Ching Lee, Hilmil Pradana, Zhi Zhou, Hanchuan Peng
Ensemble Neuron Tracer for 3D Neuron Reconstruction. Neuroinformatics 15 (2) (2017)
Hanbo Chen, Daniel Maxim Iascone, Nuno Maçarico da Costa, Ed Lein, Tianming Liu, Hanchuan Peng
Fast assembling of neuron fragments in serial 3D sections. Brain Informatics 4 (3) (2017)
Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Meng Li, Hanchuan Peng, Joe Z. Tsien, Tianming Liu
Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images. Neuroinformatics 15 (3) (2017)
Rongjian Li, Tao Zeng, Hanchuan Peng, Shuiwang Ji
Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction. IEEE Trans. Medical Imaging 36 (7) (2017)
Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai
Triple-Crossing 2.5D Convolutional Neural Network for Detecting Neuronal Arbours in 3D Microscopic Images. MLMI@MICCAI (2017)
Zhi Zhou, Xiaoxiao Liu, Brian Long, Hanchuan Peng
TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections. Neuroinformatics 14 (1) (2016)
Julian C. Shillcock, Michael Hawrylycz, Sean L. Hill, Hanchuan Peng
Reconstructing the brain: from image stacks to neuron synthesis. Brain Informatics 3 (4) (2016)
Siqi Liu, Donghao Zhang, Sidong Liu, Dagan Feng, Hanchuan Peng, Weidong Cai
Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking. Neuroinformatics 14 (4) (2016)
Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Hanchuan Peng, Joe Z. Tsien, Tianming Liu
Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding. MICCAI (1) (2016)
Donghao Zhang, Siqi Liu, Sidong Liu, Dagan Feng, Hanchuan Peng, Weidong Cai
Reconstruction of 3D neuron morphology using Rivulet back-tracking. ISBI (2016)
Ahmed Fakhry, Hanchuan Peng, Shuiwang Ji
Deep models for brain EM image segmentation: novel insights and improved performance. Bioinform. 32 (15) (2016)
Hanbo Chen, Hang Xiao, Tianming Liu, Hanchuan Peng
SmartTracing: self-learning-based Neuron reconstruction. Brain Informatics 2 (3) (2015)
Hanchuan Peng, Erik Meijering, Giorgio A. Ascoli
From DIADEM to BigNeuron. Neuroinformatics 13 (3) (2015)
Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng
BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. Neuroinformatics 13 (4) (2015)
Zhi Zhou, Staci A. Sorensen, Hanchuan Peng
Neuron crawler: An automatic tracing algorithm for very large neuron images. ISBI (2015)
Zhi Zhou, Staci A. Sorensen, Hongkui Zeng, Michael Hawrylycz, Hanchuan Peng
Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures. Neuroinformatics 13 (2) (2015)
Xiang Li, Zhi Zhou, Philipp Keller, Hongkui Zeng, Tianming Liu, Hanchuan Peng
Interactive exemplar-based segmentation toolkit for biomedical image analysis. ISBI (2015)
Ahmed Fakhry, Tao Zeng, Hanchuan Peng, Shuiwang Ji
Global analysis of gene expression and projection target correlations in the mouse brain. Brain Informatics 2 (2) (2015)
Lei Qu, Fuhui Long, Hanchuan Peng
3-D Registration of Biological Images and Models: Registration of microscopic images and its uses in segmentation and annotation. IEEE Signal Process. Mag. 32 (1) (2015)
Alessandro Bria, Giulio Iannello, Hanchuan Peng
An open-source VAA3D plugin for real-time 3D visualization of terabyte-sized volumetric images. ISBI (2015)
Alessandro Bria, Giulio Iannello, Paolo Soda, Hanchuan Peng, Giovanni Erbacci, Giuseppe Fiameni, Giacomo Mariani, Roberto Mucci, Marco Rorro, Francesco Pavone, Ludovico Silvestri, Paolo Frasconi, Roberto Cortini
A HPC infrastructure for processing and visualizing neuro-anatomical images obtained by Confocal Light Sheet Microscopy. HPCS (2014)
Jinzhu Yang, Paloma T. Gonzalez-Bellido, Hanchuan Peng
A distance-field based automatic neuron tracing method. BMC Bioinform. 14 (2013)
Hanchuan Peng, Badrinath Roysam, Giorgio A. Ascoli
Automated image computing reshapes computational neuroscience. BMC Bioinform. 14 (2013)
Jie Zhou, Santosh Lamichhane, Gabriella Sterne, Bing Ye, Hanchuan Peng
BIOCAT: a pattern recognition platform for customizable biological image classification and annotation. BMC Bioinform. 14 (2013)
Hang Xiao, Hanchuan Peng
APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree. Bioinform. 29 (11) (2013)
Sarah J. Aerni, Xiao Liu, Chuong B. Do, Samuel S. Gross, Andy Nguyen, Stephen D. Guo, Fuhui Long, Hanchuan Peng, Stuart S. Kim, Serafim Batzoglou
. Bioinform. 29 (13) (2013)
Fuhui Long, Jianlong Zhou, Hanchuan Peng
Visualization and Analysis of 3D Microscopic Images. PLoS Comput. Biol. 8 (6) (2012)
Hanchuan Peng, Alex Bateman, Alfonso Valencia, Jonathan D. Wren
. Bioinform. 28 (8) (2012)
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
Anisotropic path searching for automatic neuron reconstruction. Medical Image Anal. 15 (5) (2011)
Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers
Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. Neuroinformatics 9 (2-3) (2011)
Min Liu, Hanchuan Peng, Amit K. Roy-Chowdhury, Eugene W. Myers
3D Neuron Tip Detection in Volumetric Microscopy Images. BIBM (2011)
Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers
Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions. Neuroinformatics 9 (2-3) (2011)
Hanchuan Peng, Fuhui Long
Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets. RECOMB (2011)
Jie Zhou, Hanchuan Peng
Counting cells in 3D confocal images based on discriminative models. BCB (2011)
Hanchuan Peng, Fuhui Long, Gene Myers
Automatic 3D neuron tracing using all-path pruning. Bioinform. 27 (13) (2011)
Yang Yu, Hanchuan Peng
Automated high speed stitching of large 3D microscopic images. ISBI (2011)
Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng
. Bioinform. 27 (20) (2011)
Lei Qu, Hanchuan Peng
A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems. Bioinform. 26 (8) (2010)
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching. MICCAI (2) (2010)
Hanchuan Peng, Zongcai Ruan, Deniz Atasoy, Scott Sternson
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinform. 26 (12) (2010)
Hanchuan Peng, Fuhui Long, Eugene W. Myers
VANO: a volume-object image annotation system. Bioinform. 25 (5) (2009)
Tianming Liu, Hanchuan Peng, Xiaobo Zhou
Imaging informatics for personalised medicine: applications and challenges. Int. J. Funct. Informatics Pers. Medicine 2 (2) (2009)
Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers
images. Bioinform. 24 (2) (2008)
Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers
Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. RECOMB (2008)
Jie Zhou, Hanchuan Peng, Ching Y. Suen
Data-driven decomposition for multi-class classification. Pattern Recognit. 41 (1) (2008)
Hanchuan Peng
Bioimage informatics: a new area of engineering biology. Bioinform. 24 (17) (2008)
Jie Zhou, Hanchuan Peng
Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinform. 23 (5) (2007)
Jie Zhou, Hanchuan Peng
Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinform. 23 (12) (2007)
Fuhui Long, Hanchuan Peng, Eugene W. Myers
Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans. ISBI (2007)
Hanchuan Peng, Fuhui Long, Eugene W. Myers
Straightening Worm Images. ISBI (2007)
Chris H. Q. Ding, Xiaofeng He, Hui Xiong, Hanchuan Peng, Stephen R. Holbrook
Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques. Int. J. Data Min. Bioinform. 1 (2) (2006)
Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers
Clustering gene expression patterns of fly embryos. ISBI (2006)
Fuhui Long, Hanchuan Peng
Acquiring and calibrating a high-dynamic-range natural image database. Color Imaging: Processing, Hardcopy, and Applications (2005)
Fuhui Long, Hanchuan Peng, Damir Sudar, David W. Knowles, Sophie Lelièvre
Cell Phenotype Classification Based on 3D Cell Image Analysis. CSB Workshops (2005)
Hanchuan Peng, Fuhui Long, Chris H. Q. Ding
Feature Selection Based on Mutual Information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy. IEEE Trans. Pattern Anal. Mach. Intell. 27 (8) (2005)
Huan Liu, Edward R. Dougherty, Jennifer G. Dy, Kari Torkkola, Eugene Tuv, Hanchuan Peng, Chris H. Q. Ding, Fuhui Long, Michael E. Berens, Lance Parsons, Zheng Zhao, Lei Yu, George Forman
Evolving Feature Selection. IEEE Intell. Syst. 20 (6) (2005)
Jie Zhou, Hanchuan Peng
Toward Automatic Annotation of in situ mRNA Expression Patterns of Drosophila Embryos. CSB Workshops (2005)
Hanchuan Peng
Image Data Mining of Fruitfly Gene Expression Patterns. CSB Workshops (2005)
Chris H. Q. Ding, Xiaofeng He, Hanchuan Peng
Finding cliques in protein interaction networks via transitive closure of a weighted graph. BIOKDD (2005)
Chris H. Q. Ding, Hanchuan Peng
Minimum Redundancy Feature Selection from Microarray Gene Expression Data. J. Bioinform. Comput. Biol. 3 (2) (2005)
Hanchuan Peng, Eugene W. Myers
embryos. RECOMB (2004)
Fuhui Long, Hanchuan Peng, David Dagan Feng
Image categorization based on clustering spatial frequency maps. Storage and Retrieval Methods and Applications for Multimedia (2004)
Hanchuan Peng, Xiaofeng He, Fuhui Long
Automatic content extraction of filled-form images based on clustering component block projection vectors. DRR (2004)
Edward Herskovits, Hanchuan Peng, Christos Davatzikos
A Bayesian morphometry algorithm. IEEE Trans. Medical Imaging 23 (6) (2004)
Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu
Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB (2004)
Hanchuan Peng, Chris H. Q. Ding
Structure Search and Stability Enhancement of Bayesian Networks. ICDM (2003)
Chris H. Q. Ding, Hanchuan Peng
Minimum Redundancy Feature Selection from Microarray Gene Expression Data. CSB (2003)
Hanchuan Peng, Fuhui Long, Zheru Chi
Document Image Recognition Based on Template Matching of Component Block Projections. IEEE Trans. Pattern Anal. Mach. Intell. 25 (9) (2003)
Hanchuan Peng, Edward Herskovits, Christos Davatzikos
Bayesian clustering methods for morphological analysis of MR images. ISBI (2002)
Hanchuan Peng, Fuhui Long, Zheru Chi, Wan-Chi Siu
Document image template matching based on component block list. Pattern Recognit. Lett. 22 (9) (2001)
Fuhui Long, David Dagan Feng, Hanchuan Peng, Wan-Chi Siu
Extracting Semantic Video Objects. IEEE Computer Graphics and Applications 21 (1) (2001)
Hanchuan Peng, Fuhui Long
A Bayesian Learning Algorithm of Discrete Variables for Automatically Mining Irregular Features of Pattern Images. MDM/KDD (2001)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hanchuan Peng