Eugene W. Myers

Publication Activity (10 Years)

Years Active: 1978-2023
Publications (10 Years): 12

Top Topics

Semantic Segmentation

Top Venues

it Inf. Technol.

Publications

Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinform. 24 (1) (2023)
Kira Vinogradova, Eugene W. Myers
Estimation of Optical Aberrations in 3D Microscopic Bioimages. ICFSP (2022)
Kira Vinogradova, Eugene W. Myers
Estimation of Optical Aberrations in 3D Microscopic Bioimages. CoRR (2022)
Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers
Finding long tandem repeats in long noisy reads. Bioinform. 37 (5) (2021)
Debayan Saha, Uwe Schmidt, Qinrong Zhang, Aurelien Barbotin, Qi Hu, Na Ji, Martin J. Booth, Martin Weigert, Eugene W. Myers
Fast and accurate aberration estimation from 3D bead images using convolutional neural networks. CoRR (2020)
Martin Weigert, Kaushikaram Subramanian, Sebastian T. Bundschuh, Eugene W. Myers, Moritz Kreysing
Biobeam - Multiplexed wave-optical simulations of light-sheet microscopy. PLoS Comput. Biol. 14 (4) (2018)
Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres
Efficient Algorithms for Moral Lineage Tracing. ICCV (2017)
Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers
PreMosa: extracting 2D surfaces from 3D microscopy mosaics. Bioinform. 33 (16) (2017)
Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres
Efficient Algorithms for Moral Lineage Tracing. CoRR (2017)
Eugene W. Myers
A history of DNA sequence assembly. it Inf. Technol. 58 (3) (2016)
David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother
Mapping Auto-context Decision Forests to Deep ConvNets for Semantic Segmentation. BMVC (2016)
Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres
Moral Lineage Tracing. CVPR (2016)
Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres
Moral Lineage Tracing. CoRR (2015)
Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng
BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. Neuroinformatics 13 (4) (2015)
David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother
Relating Cascaded Random Forests to Deep Convolutional Neural Networks for Semantic Segmentation. CoRR (2015)
Fernando Amat, Eugene W. Myers, Philipp J. Keller
Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinform. 29 (3) (2013)
Saket Navlakha, Parvez Ahammad, Eugene W. Myers
Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging. BMC Bioinform. 14 (2013)
Nathan G. Clack, Daniel H. O'Connor, Daniel Huber, Leopoldo T. Petreanu, Andrew Hires, Simon Peron, Karel Svoboda, Eugene W. Myers
Automated Tracking of Whiskers in Videos of Head Fixed Rodents. PLoS Comput. Biol. 8 (7) (2012)
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
Anisotropic path searching for automatic neuron reconstruction. Medical Image Anal. 15 (5) (2011)
Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers
Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. Neuroinformatics 9 (2-3) (2011)
Min Liu, Hanchuan Peng, Amit K. Roy-Chowdhury, Eugene W. Myers
3D Neuron Tip Detection in Volumetric Microscopy Images. BIBM (2011)
Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers
Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions. Neuroinformatics 9 (2-3) (2011)
Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng
. Bioinform. 27 (20) (2011)
Steffen Jaensch, Markus Decker, Anthony A. Hyman, Eugene W. Myers
embryos. Bioinform. 26 (12) (2010)
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching. MICCAI (2) (2010)
Hanchuan Peng, Fuhui Long, Eugene W. Myers
VANO: a volume-object image annotation system. Bioinform. 25 (5) (2009)
Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers
images. Bioinform. 24 (2) (2008)
Fuhui Long, Hanchuan Peng, Eugene W. Myers
Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans. ISBI (2007)
Hanchuan Peng, Fuhui Long, Eugene W. Myers
Straightening Worm Images. ISBI (2007)
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
Two algorithms for LCS Consecutive Suffix Alignment. J. Comput. Syst. Sci. 73 (7) (2007)
Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
-Matches over a Given Length. J. Comput. Biol. 13 (2) (2006)
Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers
Clustering gene expression patterns of fly embryos. ISBI (2006)
Tien-ho Lin, Eugene W. Myers, Eric P. Xing
Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. ISMB (Supplement of Bioinformatics) (2006)
Roded Sharan, Eugene W. Myers
A motif-based framework for recognizing sequence families. ISMB (Supplement of Bioinformatics) (2005)
Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. RECOMB (2005)
Robert C. Edgar, Eugene W. Myers
PILER: identification and classification of genomic repeats. ISMB (Supplement of Bioinformatics) (2005)
Eugene W. Myers
The fragment assembly string graph. ECCB/JBI (2005)
Hanchuan Peng, Eugene W. Myers
embryos. RECOMB (2004)
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
Two Algorithms for LCS Consecutive Suffix Alignment. CPM (2004)
Eugene W. Myers
Whole Genome Sequencing, Comparative Genomics, and Systems Biology. CSB (2004)
Daniel H. Huson, Knut Reinert, Eugene W. Myers
The greedy path-merging algorithm for contig scaffolding. J. ACM 49 (5) (2002)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) (2001)
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
Comparing Assemblies Using Fragments and Mate-Pairs. WABI (2001)
Daniel H. Huson, Knut Reinert, Eugene W. Myers
The greedy path-merging algorithm for sequence assembly. RECOMB (2001)
Eric L. Anson, Eugene W. Myers
Algorithms for whole genome shotgun sequencing. RECOMB (1999)
Marie-France Sagot, Eugene W. Myers
Identifying Satellites and Periodic Repetitions in Biological Sequences. J. Comput. Biol. 5 (3) (1998)
Eugene W. Myers, Paulo Oliva, Katia S. Guimarães
Reporting Exact and Approximate Regular Expression Matches. CPM (1998)
Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt
Incremental String Comparison. SIAM J. Comput. 27 (2) (1998)
Marie-France Sagot, Eugene W. Myers
Identifying satellites in nucleic acid sequences. RECOMB (1998)
Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo
Xlandscape: the graphical display of word frequencies in sequences. Bioinform. 14 (1) (1998)
Mudita Jain, Eugene W. Myers
Algorithms for computing and integrating physical maps using unique probes. RECOMB (1997)
Mudita Jain, Eugene W. Myers
Algorithms for Computing and Integrating Physical Maps Using Unique Probes. J. Comput. Biol. 4 (4) (1997)
Eric L. Anson, Eugene W. Myers
ReAligner: A Program for Refining DNA Sequence Multi-Alignments. J. Comput. Biol. 4 (3) (1997)
Eric L. Anson, Eugene W. Myers
ReAligner: a program for refining DNA sequence multi-alignments. RECOMB (1997)
Sampath Kannan, Eugene W. Myers
An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score. SIAM J. Comput. 25 (3) (1996)
Sun Wu, Udi Manber, Eugene W. Myers
A Subquadratic Algorithm for Approximate Limited Expression Matching. Algorithmica 15 (1) (1996)
Eugene W. Myers
Toward Simplifying and Accurately Formulating Fragment Assembly. J. Comput. Biol. 2 (2) (1995)
James R. Knight, Eugene W. Myers
Approximate Regular Expression Pattern Matching with Concave Gap Penalties. Algorithmica 14 (1) (1995)
Eugene W. Myers
Guest Editor's Foreword: Special Issue on Computational Molecular Biology. Algorithmica 13 (1/2) (1995)
John D. Kececioglu, Eugene W. Myers
Combinatiorial Algorithms for DNA Sequence Assembly. Algorithmica 13 (1/2) (1995)
Sun Wu, Udi Manber, Eugene W. Myers
A Subquadratic Algorithm for Approximate Regular Expression Matching. J. Algorithms 19 (3) (1995)
Mudita Jain, Eugene W. Myers
A Note on Scoring Clones Given a Probe Ordering. J. Comput. Biol. 2 (1) (1995)
James R. Knight, Eugene W. Myers
Super-Pattern Matching. Algorithmica 13 (1/2) (1995)
Eugene W. Myers
A Sublinear Algorithm for Approximate Keyword Searching. Algorithmica 12 (4/5) (1994)
Udi Manber, Eugene W. Myers
Suffix Arrays: A New Method for On-Line String Searches. SIAM J. Comput. 22 (5) (1993)
Sampath Kannan, Eugene W. Myers
An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. CPM (1993)
Eugene W. Myers
A Four Russians Algorithm for Regular Expression Pattern Matching. J. ACM 39 (2) (1992)
James R. Knight, Eugene W. Myers
Approximate Regular Expression Pattern Matching with Concave Gap Penalties. CPM (1992)
Eugene W. Myers, Webb Miller
Row Replacement Algorithms for Screen Editors. ACM Trans. Program. Lang. Syst. 11 (1) (1989)
J. D. Hall, Eugene W. Myers
A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Comput. Appl. Biosci. 4 (1) (1988)
Webb Miller, Eugene W. Myers
A Simple Row-replacement Method. Softw. Pract. Exp. 18 (7) (1988)
Eugene W. Myers, Webb Miller
Optimal alignments in linear space. Comput. Appl. Biosci. 4 (1) (1988)
Christopher W. Fraser, Eugene W. Myers
An Editor for Revision Control. ACM Trans. Program. Lang. Syst. 9 (2) (1987)
Webb Miller, Eugene W. Myers
Side-effects in Automatic File Updating. Softw. Pract. Exp. 16 (9) (1986)
Eugene W. Myers, David W. Mount
Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Res. 14 (1) (1986)
Eugene W. Myers
An O(ND) Difference Algorithm and Its Variations. Algorithmica 1 (2) (1986)
Webb Miller, Eugene W. Myers
A File Comparison Program. Softw. Pract. Exp. 15 (11) (1985)
Eugene W. Myers
An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem. SIAM J. Comput. 14 (3) (1985)
Christopher W. Fraser, Eugene W. Myers, Alan L. Wendt
Analyzing and compressing assembly code. SIGPLAN Symposium on Compiler Construction (1984)
Eugene W. Myers
Efficient Applicative Data Types. POPL (1984)
Eugene W. Myers
An Applicative Random-Access Stack. Inf. Process. Lett. 17 (5) (1983)
Eugene W. Myers
A Precise Interprocedural Data Flow Algorithm. POPL (1981)
Eugene W. Myers, Leon J. Osterweil
BIGMAC II: A FORTRAN Language Augmentation Tool. ICSE (1981)
Harold N. Gabow, Eugene W. Myers
Finding All Spanning Trees of Directed and Undirected Graphs. SIAM J. Comput. 7 (3) (1978)