Robert C. Edgar

Publication Activity (10 Years)

Years Active: 2003-2018
Publications (10 Years): 2

Top Topics

Threshold Values

Rna Secondary Structure Prediction

Error Correcting

Thresholding Method

Top Venues

Publications

Robert C. Edgar
Updating the 97% identity threshold for 16S ribosomal RNA OTUs. Bioinform. 34 (14) (2018)
Robert C. Edgar, Henrik Flyvbjerg
Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinform. 31 (21) (2015)
Robert C. Edgar, Brian J. Haas, José Carlos Clemente, Christopher Quince, Rob Knight
UCHIME improves sensitivity and speed of chimera detection. Bioinform. 27 (16) (2011)
Robert C. Edgar
Search and clustering orders of magnitude faster than BLAST. Bioinform. 26 (19) (2010)
Robert C. Edgar
Optimizing substitution matrix choice and gap parameters for sequence alignment. BMC Bioinform. 10 (2009)
Robert C. Edgar
PILER-CR: Fast and accurate identification of CRISPR repeats. BMC Bioinform. 8 (2007)
Robert C. Edgar, Eugene W. Myers
PILER: identification and classification of genomic repeats. ISMB (Supplement of Bioinformatics) (2005)
Robert C. Edgar, Kimmen Sjölander
A comparison of scoring functions for protein sequence profile alignment. Bioinform. 20 (8) (2004)
Robert C. Edgar, Kimmen Sjölander
COACH: profile-profile alignment of protein families using hidden Markov models. Bioinform. 20 (8) (2004)
Robert C. Edgar
MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. CSB (2004)
Robert C. Edgar
MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 5 (2004)
Robert C. Edgar, Kimmen Sjölander
SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models. Bioinform. 19 (11) (2003)
Robert C. Edgar, Kimmen Sjölander
Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models. Pacific Symposium on Biocomputing (2003)