SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models.
Robert C. EdgarKimmen SjölanderPublished in: Bioinform. (2003)
Keyphrases
- tree construction
- sequence alignment
- pairwise
- decision trees
- suffix tree
- dynamic programming
- gpu accelerated
- protein sequences
- r tree
- multiple alignment
- binding sites
- amino acids
- comparative genomics
- genetic algorithm
- secondary structure
- relational databases
- training set
- feature selection
- multiple sequence alignment
- neural network
- databases
- database