Stephan Saalfeld

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 15

Top Topics

Electron Microscopy

Interactive Visualization

Deformable Registration

Top Venues

Publications

Cédric Allier, Magdalena C. Schneider, Michael Innerberger, Larissa Heinrich, John A. Bogovic, Stephan Saalfeld
Decomposing heterogeneous dynamical systems with graph neural networks. CoRR (2024)
Gabriel J. Selzer, Curtis T. Rueden, Mark C. Hiner, Edward L. Evans, David Kolb, Marcel Wiedenmann, Christian Birkhold, Tim-Oliver Buchholz, Stefan Helfrich, Brian Northan, Alison E. Walter, Johannes E. Schindelin, Tobias Pietzsch, Stephan Saalfeld, Michael R. Berthold, Kevin W. Eliceiri
SciJava Ops: An Improved Algorithms Framework for Fiji and Beyond. CoRR (2024)
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 41 (7) (2019)
Khaled Khairy, Gennady Denisov, Stephan Saalfeld
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach. CoRR (2018)
Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld
The candidate multi-cut for cell segmentation. ISBI (2018)
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) (2018)
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR (2018)
Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld
Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy. Bioinform. 33 (9) (2017)
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR (2017)
Larissa Heinrich, John A. Bogovic, Stephan Saalfeld
Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron Microscopy. MICCAI (2) (2017)
Larissa Heinrich, John A. Bogovic, Stephan Saalfeld
Deep Learning for Isotropic Super-Resolution from Non-Isotropic 3D Electron Microscopy. CoRR (2017)
Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers
PreMosa: extracting 2D surfaces from 3D microscopy mosaics. Bioinform. 33 (16) (2017)
Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld
The Candidate Multi-Cut for Cell Segmentation. CoRR (2017)
David Grant Colburn Hildebrand, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur W. Wetzel, Andrew Scott Champion, Brett J. Graham, Owen Randlett, George S. Plummer, Ruben Portugues, Isaac Henry Bianco, Stephan Saalfeld, Alexander D. Baden, Kunal Lillaney, Randal C. Burns, Joshua T. Vogelstein, Alexander Schier, Wei-Chung Allen Lee, Won-Ki Jeong, Jeff William Lichtman, Florian Engert
Whole-brain serial-section electron microscopy in larval zebrafish. Nat. 545 (7654) (2017)
John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld
Robust registration of calcium images by learned contrast synthesis. ISBI (2016)
Philipp Hanslovsky, John A. Bogovic, C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Harald F. Hess, Stephan Saalfeld
Image based compensation for thickness variation in microscopy section series. CoRR (2015)
Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld
Post-acquisition image based compensation for thickness variation in microscopy section series. ISBI (2015)
John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld
Robust Registration of Calcium Images by Learned Contrast Synthesis. CoRR (2015)
Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld
Post-acquisition image based compensation for thickness variation in microscopy section series. CoRR (2014)
Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets. CoRR (2014)
Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld
ImgLib2 - generic image processing in Java. Bioinform. 29 (2) (2013)
Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld
ImgLib2 - generic image processing in Java. Bioinform. 28 (22) (2012)
Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinform. 26 (12) (2010)
Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak
CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinform. 25 (15) (2009)
Stephan Preibisch, Stephan Saalfeld, Torsten Rohlfing, Pavel Tomancak
Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching. Medical Imaging: Image Processing (2009)
Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinform. 25 (11) (2009)