Jan Funke

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 26

Top Topics

Structured Learning

Escherichia Coli

Convolutional Neural Networks

Cell Segmentation

Top Venues

Publications

Steffen Wolf, Manan Lalit, Katie McDole, Jan Funke
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. ICCV (2023)
Jeff L. Rhoades, Arlo Sheridan, Mukul Narwani, Brian Reicher, Mark Larson, Shuhan Xie, Tri Nguyen, Aaron T. Kuan, Alexandra Pacureanu, Wei-Chung Allen Lee, Jan Funke
Unpaired Image Enhancement for Neurite Segmentation in x-ray Tomography. ISBI (2023)
Steffen Wolf, Manan Lalit, Henry Westmacott, Katie McDole, Jan Funke
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. CoRR (2023)
Nils Eckstein, Habib Bukhari, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
Discriminative Attribution from Paired Images. ECCV Workshops (4) (2022)
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages. MICCAI (4) (2022)
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages. CoRR (2022)
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
How Shift Equivariance Impacts Metric Learning for Instance Segmentation. ICCV (2021)
Nils Eckstein, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
Discriminative Attribution from Counterfactuals. CoRR (2021)
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
How Shift Equivariance Impacts Metric Learning for Instance Segmentation. CoRR (2021)
Steffen Wolf, Fred A. Hamprecht, Jan Funke
Instance Separation Emerges from Inpainting. CoRR (2020)
Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
Microtubule Tracking in Electron Microscopy Volumes. MICCAI (5) (2020)
Steffen Wolf, Fred A. Hamprecht, Jan Funke
Inpainting Networks Learn to Separate Cells in Microscopy Images. BMVC (2020)
Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
Microtubule Tracking in Electron Microscopy Volumes. CoRR (2020)
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 41 (7) (2019)
Jan Funke, Lisa Mais, Andrew Champion, Natalie Dye, Dagmar Kainmueller
A Benchmark for Epithelial Cell Tracking. ECCV Workshops (6) (2018)
Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
Synaptic partner prediction from point annotations in insect brains. CoRR (2018)
Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
Synaptic Partner Prediction from Point Annotations in Insect Brains. MICCAI (2) (2018)
Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld
The candidate multi-cut for cell segmentation. ISBI (2018)
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) (2018)
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR (2018)
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR (2017)
Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld
The Candidate Multi-Cut for Cell Segmentation. CoRR (2017)
Jan Funke, Jonas Klein, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook
Structured learning of assignment models for neuron reconstruction to minimize topological errors. ISBI (2016)
Fabian Tschopp, Julien N. P. Martel, Srinivas C. Turaga, Matthew Cook, Jan Funke
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems. ISBI (2016)
Alexander Vakhitov, Jan Funke, Francesc Moreno-Noguer
Accurate and Linear Time Pose Estimation from Points and Lines. ECCV (7) (2016)
Julia M. Buhmann, Stephan Gerhard, Matthew Cook, Jan Funke
Tracking of microtubules in anisotropic volumes of neural tissue. ISBI (2016)
Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) (2015)
Jan Funke, Fred A. Hamprecht, Chong Zhang
Learning to Segment: Training Hierarchical Segmentation under a Topological Loss. MICCAI (3) (2015)
Jan Funke, Jonas Klein, Albert Cardona, Matthew Cook
A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms. CoRR (2015)
Florian Jug, Tobias Pietzsch, Dagmar Kainmüller, Jan Funke, Matthias Kaiser, Erik van Nimwegen, Carsten Rother, Gene Myers
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine. BAMBI (2014)
Jan Funke, Julien N. P. Martel, Stephan Gerhard, Björn Andres, Dan C. Ciresan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Hanspeter Pfister, Albert Cardona, Matthew Cook
Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. MICCAI (1) (2014)
Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
Efficient automatic 3D-reconstruction of branching neurons from EM data. CVPR (2012)
Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes CoRR (2011)
Tobias Pietzsch, Jan Funke
A Framework For Evaluating Visual SLAM. BMVC (2009)