Anna Kreshuk

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 26

Top Topics

Domain Knowledge

Microscopy Imaging

Image Segmentation

Top Venues

Frontiers Comput. Sci.

Publications

Paul Hilt, Maedeh Zarvandi, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk
Reinforcement learning for instance segmentation with high-level priors. ICCV (Workshops) (2023)
Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
Understanding metric-related pitfalls in image analysis validation. CoRR (2023)
Alberto Bailoni, Constantin Pape, Nathan Hütsch, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht
GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation. CVPR (2022)
Alex Matskevych, Adrian Wolny, Constantin Pape, Anna Kreshuk
From Shallow to Deep: Exploiting Feature-Based Classifiers for Domain Adaptation in Semantic Segmentation. Frontiers Comput. Sci. 4 (2022)
Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk
Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CVPR (2022)
Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR (2022)
Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
Developing open-source software for bioimage analysis: opportunities and challenges. F1000Research 10 (2021)
Paul Hilt, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk
Stateless actor-critic for instance segmentation with high-level priors. CoRR (2021)
Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning. IEEE Trans. Pattern Anal. Mach. Intell. 43 (10) (2021)
Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk
Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CoRR (2021)
Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht
Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. CoRR (2020)
Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht
Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. GCPR (2020)
Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht
The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. ECCV (6) (2020)
Alberto Bailoni, Constantin Pape, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht
A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation. CoRR (2019)
Constantin Pape, Alex Matskevych, Adrian Wolny, Julian Hennies, Giulia Mizzon, Marion Louveaux, Jacob Musser, Alexis Maizel, Detlev Arendt, Anna Kreshuk
Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts. Frontiers Comput. Sci. 1 (2019)
Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve B. Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers Neuroinformatics 13 (2019)
Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Kraemer, Yannick Schwab, Anna Kreshuk
Synthetic patches, real images: screening for centrosome aberrations in EM images of human cancer cells. CoRR (2019)
Constantin Pape, Alex Matskevych, Julian Hennies, Anna Kreshuk
Leveraging Domain Knowledge to improve EM image segmentation with Lifted Multicuts. CoRR (2019)
Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht
The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. CoRR (2019)
Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Krämer, Yannick Schwab, Anna Kreshuk
Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells. MICCAI (1) (2019)
Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk
Domain Adaptive Segmentation In Volume Electron Microscopy Imaging. ISBI (2019)
Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
The Mutex Watershed and its Objective: Efficient, Parameter-Free Image Partitioning. CoRR (2019)
Steffen Wolf, Constantin Pape, Alberto Bailoni, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV (4) (2018)
Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk
Domain Adaptive Segmentation in Volume Electron Microscopy Imaging. CoRR (2018)
Nikola Krasowski, Thorsten Beier, Graham Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk
Neuron Segmentation With High-Level Biological Priors. IEEE Trans. Medical Imaging 37 (4) (2018)
Constantin Pape, Thorsten Beier, Peter Li, Viren Jain, Davi D. Bock, Anna Kreshuk
Solving Large Multicut Problems for Connectomics via Domain Decomposition. ICCV Workshops (2017)
Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) (2015)
Nikola Krasowski, Thorsten Beier, Graham W. Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk
Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors. ISBI (2015)
Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann, Eddy Offermann, Valeriy Onuchin, Suzanne Panacek, Fons Rademakers, Paul Russo, Matevz Tadel
ROOT - A C++ Framework for Petabyte Data Storage, Statistical Analysis and Visualization. CoRR (2015)
Anna Kreshuk, Christoph N. Straehle, Christoph Sommer, Ullrich Köthe, Graham Knott, Fred A. Hamprecht
Automated segmentation of synapses in 3D EM data. ISBI (2011)
Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann
ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. 182 (6) (2011)
Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta
ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. 180 (12) (2009)
Rene Brun, Philippe Canal, Mario Frank, Anna Kreshuk, S. Linev, Paul Russo, Fons Rademakers
Developments in ROOT I/O and trees CoRR (2009)