Aaron L. Halpern

Publication Activity (10 Years)

Years Active: 2001-2012
Publications (10 Years): 0

Top Topics

High Throughput

Gene Expression Time Series

Top Venues

J. Comput. Biol.

Publications

Paolo Carnevali, Jonathan Baccash, Aaron L. Halpern, Igor Nazarenko, Geoffrey B. Nilsen, Krishna P. Pant, Jessica C. Ebert, Anushka Brownley, Matt Morenzoni, Vitali Karpinchyk, Bruce Martin, Dennis G. Ballinger, Radoje Drmanac
Computational Techniques for Human Genome Resequencing Using Mated Gapped Reads. J. Comput. Biol. 19 (3) (2012)
Yuan Li, Aaron L. Halpern, Shaojie Zhang
TreeLign: simultaneous stepwise alignment and phylogenetic positioning, with its application to automatic phylogenetic assignment of 16S rRNAs. BCB (2011)
Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton
Consensus generation and variant detection by Celera Assembler. Bioinform. 24 (8) (2008)
Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern
A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics (2007)
Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson
Syntenic Layout of Two Assemblies of Related Genomes. German Conference on Bioinformatics (2004)
Aaron L. Halpern, Daniel H. Huson, Knut Reinert
Segment Match Refinement and Applications. WABI (2002)
Daniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry
Efficiently detecting polymorphisms during the fragment assembly process. ISMB (2002)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) (2001)
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
Comparing Assemblies Using Fragments and Mate-Pairs. WABI (2001)
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics (2001)