Brian Walenz

Publication Activity (10 Years)

Years Active: 2000-2020
Publications (10 Years): 2

Top Topics

Weighted Distance

Assembly Systems

Sampling Strategy

Top Venues

PLoS Comput. Biol.

Publications

Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
Weighted minimizer sampling improves long read mapping. Bioinform. 36 (Supplement-1) (2020)
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
Integrating Hi-C links with assembly graphs for chromosome-scale assembly. PLoS Comput. Biol. 15 (8) (2019)
Brian Walenz, Liliana Florea
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing. Bioinform. 27 (13) (2011)
Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton
An algorithm for automated closure during assembly. BMC Bioinform. 11 (2010)
Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton
Aggressive assembly of pyrosequencing reads with mates. Bioinform. 24 (24) (2008)
Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton
Consensus generation and variant detection by Celera Assembler. Bioinform. 24 (8) (2008)
Ian M. Dew, Brian Walenz, Granger G. Sutton
A Tool for Analyzing Mate Pairs in Assemblies (TAMPA). J. Comput. Biol. 12 (5) (2005)
Ross A. Lippert, Clark M. Mobarry, Brian Walenz
A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data. J. Comput. Biol. 12 (7) (2005)
Alberto Caprara, Robert D. Carr, Sorin Istrail, Giuseppe Lancia, Brian Walenz
1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap. J. Comput. Biol. 11 (1) (2004)
Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail
101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem. RECOMB (2001)
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics (2001)
Deborah Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz
Algorithmic strategies in combinatorial chemistry. SODA (2000)