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101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem.
Giuseppe Lancia
Robert D. Carr
Brian Walenz
Sorin Istrail
Published in:
RECOMB (2001)
Keyphrases
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dynamic programming
optimal solution
search space
contact map
worst case
similarity measure
objective function
quadratic assignment problem
graph structure
protein structure
simulated annealing
np hard
clustering method
space complexity
computational biology
high dimensional
maximum clique