Sergey Koren

ORCID

Publication Activity (10 Years)

Years Active: 2008-2020
Publications (10 Years): 7

Top Venues

University of Maryland, College Park, MD, USA (PHD)

Education History

University of Maryland, College Park, MD, USA

PHD

Publications

Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
Weighted minimizer sampling improves long read mapping. Bioinform. 36 (Supplement-1) (2020)
Alexander T. Dilthey, Alexander J. Mentzer, Raphael Carapito, Clare Cutland, Nezih Cereb, Shabir A Madhi, Arang Rhie, Sergey Koren, Seiamak Bahram, Gil McVean, Adam M. Phillippy
HLA*LA - HLA typing from linearly projected graph alignments. Bioinform. 35 (21) (2019)
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
Integrating Hi-C links with assembly graphs for chromosome-scale assembly. PLoS Comput. Biol. 15 (8) (2019)
Nathan D. Olson, Todd J. Treangen, Christopher Michael Hill, Victoria Cepeda-Espinoza, Jay Ghurye, Sergey Koren, Mihai Pop
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings Bioinform. 20 (4) (2019)
Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru
A fast adaptive algorithm for computing whole-genome homology maps. Bioinform. 34 (17) (2018)
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. J. Comput. Biol. 25 (7) (2018)
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. RECOMB (2017)
Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy
Automated ensemble assembly and validation of microbial genomes. BMC Bioinform. 15 (2014)
Christopher Michael Hill, Irina Astrovskaya, Howard Huang, Sergey Koren, Atif Memon, Todd J. Treangen, Mihai Pop
De novo likelihood-based measures for comparing metagenomic assemblies. BIBM (2013)
Sergey Koren, Todd J. Treangen, Mihai Pop
Bambus 2: scaffolding metagenomes. Bioinform. 27 (21) (2011)
Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton
An algorithm for automated closure during assembly. BMC Bioinform. 11 (2010)
Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert
and reference-guided sequence assembly of short reads. Bioinform. 25 (9) (2009)
Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton
Aggressive assembly of pyrosequencing reads with mates. Bioinform. 24 (24) (2008)

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Publication Activity (10 Years)

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Sergey Koren