Mihai Pop

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 25

Top Topics

Outlier Detection

Recent Advances

Computational Challenges

Top Venues

PLoS Comput. Biol.

Publications

Kiran Javkar, Hugh Rand, Errol Strain, Mihai Pop
PRAWNS: compact pan-genomic features for whole-genome population genomics. Bioinform. 39 (1) (2023)
Brook Stacy, Jason Hauzel, Mikael Lindvall, Adam Porter, Mihai Pop
Metamorphic Testing in Bioinformatics Software: A Case Study on Metagenomic Assembly. MET@ICSE (2022)
Horatiu Florian, Camelia Avram, Mihai Pop, Adrian Mocanu, Dan Radu, Adina Astilean
Probabilistic Petri Nets Model for Assessing Temporal Variations of the Number of Bikes in Bike-Sharing Stations. AQTR (2022)
Nidhi Shah, Erin K. Molloy, Mihai Pop, Tandy J. Warnow
TIPP2: metagenomic taxonomic profiling using phylogenetic markers. Bioinform. 37 (13) (2021)
Seth Commichaux, Nidhi Shah, Jay Ghurye, Alexander Stoppel, Jessica A. Goodheart, Guillermo G. Luque, Michael P. Cummings, Mihai Pop
A critical assessment of gene catalogs for metagenomic analysis. Bioinform. 37 (18) (2021)
Paul Medvedev, Mihai Pop
What do Eulerian and Hamiltonian cycles have to do with genome assembly? PLoS Comput. Biol. 17 (5) (2021)
Horatiu Florian, Mihai Pop, Camelia Avram, Adina Astilean
Similarity measure for station clustering in bike sharing systems. AQTR (2020)
Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul
Benchmarking of computational error-correction methods for next-generation sequencing data. BCB (2020)
Dreycey Albin, Pravin Muthu, Gene Godbold, Mikael Lindvall, Madeline Diep, Adam Porter, Mihai Pop, Krista Ternus, Todd J. Treangen, Dan Nasko, Ryan A. Leo Elworth, Jacob Lu, Advait Balaji, Christian Diaz, Nidhi Shah, Jeremy D. Selengut, Chris Hulme-Lowe
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest. BIBM (2019)
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
Integrating Hi-C links with assembly graphs for chromosome-scale assembly. PLoS Comput. Biol. 15 (8) (2019)
Jay Ghurye, Mihai Pop
Modern technologies and algorithms for scaffolding assembled genomes. PLoS Comput. Biol. 15 (6) (2019)
Nathan D. Olson, Todd J. Treangen, Christopher Michael Hill, Victoria Cepeda-Espinoza, Jay Ghurye, Sergey Koren, Mihai Pop
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings Bioinform. 20 (4) (2019)
Nidhi Shah, Michael G. Nute, Tandy J. Warnow, Mihai Pop
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. 35 (9) (2019)
Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier detection in BLAST hits. Algorithms Mol. Biol. 13 (1) (2018)
Mihai Pop, Adrian Sabou
Gesture-based Visual Analytics in Virtual Reality. RoCHI (2017)
Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier Detection in BLAST Hits. WABI (2017)
Adina Astilean, Camelia Avram, Ramona Bolboaca, Valentin Sita, Mihai Pop
Events based advanced control strategy for urban street lighting. ICE/ITMC (2017)
Brian Brubach, Jay Ghurye, Mihai Pop, Aravind Srinivasan
Better Greedy Sequence Clustering with Fast Banded Alignment. WABI (2017)
Mihai Pop, Mirela Dobra, Claudiu Domuta, Mihai Hulea, Adina Astilean
Two stage scheduling method of touristic transport in multimodal networks. AQTR (2016)
Jay Ghurye, Mihai Pop
Better Identification of Repeats in Metagenomic Scaffolding. WABI (2016)
Lee Mendelowitz, David C. Schwartz, Mihai Pop
Maligner: a fast ordered restriction map aligner. Bioinform. 32 (7) (2016)
Gene Myers, Mihai Pop, Knut Reinert, Tandy J. Warnow
Next Generation Sequencing (Dagstuhl Seminar 16351). Dagstuhl Reports 6 (8) (2016)
Amelia Bateman, Todd J. Treangen, Mihai Pop
Limitations of Current Approaches for Reference-Free, Graph-Based Variant Detection. BCB (2016)
Mihai Pop, Steven Salzberg
Use and mis-use of supplementary material in science publications. BMC Bioinform. 16 (2015)
Mihai Pop
Computational challenges in microbiome research. BIBM (2015)
Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy
Automated ensemble assembly and validation of microbial genomes. BMC Bioinform. 15 (2014)
Nam-phuong Nguyen, Siavash Mirarab, Bo Liu, Mihai Pop, Tandy J. Warnow
TIPP: taxonomic identification and phylogenetic profiling. Bioinform. 30 (24) (2014)
Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14 (2) (2013)
Christopher Michael Hill, Irina Astrovskaya, Howard Huang, Sergey Koren, Atif Memon, Todd J. Treangen, Mihai Pop
De novo likelihood-based measures for comparing metagenomic assemblies. BIBM (2013)
Christopher Michael Hill, Carl H. Albach, Sebastian G. Angel, Mihai Pop
K-mulus: Strategies for BLAST in the Cloud. PPAM (2) (2013)
Jurgen F. Nijkamp, Mihai Pop, Marcel J. T. Reinders, Dick de Ridder
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinform. 29 (22) (2013)
Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon, Mihai Pop, Douglas W. Yu
Exploiting sparseness in de novo genome assembly. BMC Bioinform. 13 (S-6) (2012)
Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower
Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8 (11) (2012)
Henry C. Lin, Steve Goldstein, Lee Mendelowitz, Shiguo Zhou, Joshua Wetzel, David C. Schwartz, Mihai Pop
AGORA: Assembly Guided by Optical Restriction Alignment. BMC Bioinform. 13 (2012)
Mihai Pop
Review of parallel algorithms by Henri Casanova, Arnaud Legrand, and Yves Robert. SIGACT News 43 (2) (2012)
Bo Liu, Mihai Pop
Workshop: Comparative assembly of metagenomic sequences. ICCABS (2012)
Mohammadreza Ghodsi, Bo Liu, Mihai Pop
DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC Bioinform. 12 (2011)
Joshua Wetzel, Carl Kingsford, Mihai Pop
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC Bioinform. 12 (2011)
Mihai Pop
Invited: Challenges in metagenomic assembly. ICCABS (2011)
Chengxi Ye, Charles H. Cannon, Zhanshan (Sam) Ma, Douglas W. Yu, Mihai Pop
SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly CoRR (2011)
Sergey Koren, Todd J. Treangen, Mihai Pop
Bambus 2: scaffolding metagenomes. Bioinform. 27 (21) (2011)
Mihai Pop
Workshop: Can you assemble whole genomes from next generation sequencing data? ICCABS (2011)
Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon, Mihai Pop, Douglas W. Yu
SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph CoRR (2011)
Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. J. Comput. Biol. 17 (3) (2010)
James Robert White, Saket Navlakha, Niranjan Nagarajan, Mohammadreza Ghodsi, Carl Kingsford, Mihai Pop
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC Bioinform. 11 (2010)
Carl Kingsford, Michael C. Schatz, Mihai Pop
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinform. 11 (2010)
Bo Liu, Mihai Pop
Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. ISBRA (2010)
Bo Liu, Theodore Gibbons, Mohammadreza Ghodsi, Mihai Pop
MetaPhyler: Taxonomic profiling for metagenomic sequences. BIBM (2010)
Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. RECOMB (2009)
James Robert White, Niranjan Nagarajan, Mihai Pop
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput. Biol. 5 (4) (2009)
Bo Liu, Mihai Pop
ARDB - Antibiotic Resistance Genes Database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Mohammadreza Ghodsi, Mihai Pop
Inexact Local Alignment Search over Suffix Arrays. BIBM (2009)
Niranjan Nagarajan, Mihai Pop
Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. J. Comput. Biol. 16 (7) (2009)
Mihai Pop
Genome assembly reborn: recent computational challenges. Briefings Bioinform. 10 (4) (2009)
Niranjan Nagarajan, Timothy D. Read, Mihai Pop
Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinform. 24 (10) (2008)
James Robert White, Michael Roberts, James A. Yorke, Mihai Pop
Figaro: a novel statistical method for vector sequence removal. Bioinform. 24 (4) (2008)
Daniel D. Sommer, Arthur L. Delcher, Steven L. Salzberg, Mihai Pop
Minimus: a fast, lightweight genome assembler. BMC Bioinform. 8 (2007)
Mihai Pop, Adam M. Phillippy, Arthur L. Delcher, Steven Salzberg
Comparative genome assembly. Briefings Bioinform. 5 (3) (2004)
Mihai Pop
Shotgun Sequence Assembly. Adv. Comput. 60 (2004)
Mihai Pop, Steven Salzberg, Martin Shumway
Genome Sequence Assembly: Algorithms and Issues. Computer 35 (7) (2002)
Mihai Pop, Christian A. Duncan, Gill Barequet, Michael T. Goodrich, Wenjing Huang, Subodh Kumar
Efficient perspective-accurate silhouette computation and applications. SCG (2001)
Gill Barequet, Christian A. Duncan, Michael T. Goodrich, Subodh Kumar, Mihai Pop
Efficient Perspective-Accurate Silhouette Computation. SCG (1999)
Alok Aggarwal, S. Rao Kosaraju, Mihai Pop
Drawing of Two-Dimensional Irregular Meshes. Graph Drawing (1998)
S. Rao Kosaraju, Mihai Pop
De-amortization of Algorithms. COCOON (1998)